Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0300
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.72 
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   2.2  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   8.8  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 254 LQFTPLH--NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLK-EGTLADYKATLP 424
           L+ T LH  + +RI++++H  I N+P  F L +    + + L C ++  G +       P
Sbjct: 269 LEATLLHYPDYERIHSDIHVRITNLPTCFTLRD---LRQSHLNCLVRVSGVVTRRTGLFP 325

Query: 425 ILKSYPKVTVEVCGSS 472
            LK Y + T   CG++
Sbjct: 326 QLK-YIRFTCTKCGAT 340


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +2

Query: 269 LHNIDRINTE--VHGVIMNIPIPFPLPESDAC------KDNGLTCPLKEGTLADYKATLP 424
           LH + ++N +  VHGV++ +P+P  L E          KD         G LA   AT  
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNIGLLAKNDATPI 170

Query: 425 ILKSYPKVTVEVCGSSKVNMA 487
                PK  +E+   +K+++A
Sbjct: 171 HYPCTPKGIMELLKDNKISVA 191


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -1

Query: 178 WTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYKTAR*RVHDSRAYG 5
           W ++SL     + + + ++KS         F+++  FG +KN Y      V+   A G
Sbjct: 163 WLLSSLAVNEFRTIQN-ISKSIWYTRLGIFFIEETHFGDLKNYYTNVVDEVNQKAAAG 219


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 280 RSHKYRSSRGHHEHPDTVP 336
           RS  YRS R H+++ DT P
Sbjct: 336 RSDSYRSKREHYDNRDTGP 354


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 184 TLWTVASLDPQSLKNLASALAKSTAAVMKNNI 89
           T W V   DP  LK  A+ + +   +++ +NI
Sbjct: 300 TRWVVDKADPNFLKPKAAMILEKILSILSSNI 331


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 289 KYRSSRGHHEHPDTVPPAGV 348
           +YRSS   H  P ++PP+ +
Sbjct: 88  RYRSSAARHFEPISIPPSAI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,356
Number of Sequences: 5004
Number of extensions: 50523
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)