Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0300
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31) 46 2e-05
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) 31 1.00
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 31 1.00
SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088) 29 2.3
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 2.3
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 29 4.0
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 29 4.0
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 27 9.3
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 27 9.3
>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 254 LQFTPLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILK 433
L F P ++ R H +I +P+P P+P SDAC+ GL+CP+ G + +K I
Sbjct: 60 LTFIPHEDLKRAKLSAHAIIDKLPLPLPIP-SDACQGYGLSCPVDSGVKSMFKIHQAIES 118
Query: 434 SYP 442
+P
Sbjct: 119 EFP 121
>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
Length = 167
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 260 FTPLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSY 439
F P + EV G+I + +PFPL + C+++G+ CP+ G A + + Y
Sbjct: 62 FVPNELVSSATIEVFGIIGGVQVPFPLKNPNVCENHGVKCPINAGDSATLDLNIYVSNLY 121
Query: 440 PKV 448
P +
Sbjct: 122 PSL 124
>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
Length = 171
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 365 NGLTCPLKEGTLADYKATLPILKSYPKVTVEVCG 466
N + +KEGTL D++ATLP Y + VE+ G
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVELAG 84
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 365 NGLTCPLKEGTLADYKATLPILKSYPKVTVEVCG 466
N + +KEGTL D++ATLP Y + VE+ G
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVELAG 84
>SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)
Length = 488
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 499 RKLSRHVHFGAPTYFHCHLRIRLQDRQCCFIIRQGSLLEGAGQP 368
R+ R++HF AP Y H H+ CC++ LL +GQP
Sbjct: 93 REERRNMHFIAPEYVHLHV--------CCWLTFLNYLLVDSGQP 128
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +2
Query: 335 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 442
PLP + C D NG TC GT ++ + LP+ K P
Sbjct: 372 PLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Frame = +2
Query: 335 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 442
PLP + C D NG TC GT + LP+ K P
Sbjct: 297 PLPNAVCCDDGVHCCPNGYTCDTASGTCNKGDSVLPLFKKTP 338
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H +SR HHEH T+
Sbjct: 157 TSLQHHEHITTTSRTHHEHITTI 179
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H SR HHEH T+
Sbjct: 190 TSLQHHEHITTISRTHHEHITTI 212
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H SR HHEH T+
Sbjct: 223 TSLQHHEHITTISRTHHEHITTI 245
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H +SR HHEH T+
Sbjct: 90 TSLQHHEHITTTSRTHHEHITTI 112
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H SR HHEH T+
Sbjct: 123 TSLQHHEHITTISRTHHEHITTI 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 265 TTAQHRSHKYRSSRGHHEHPDTV 333
T+ QH H SR HHEH T+
Sbjct: 156 TSLQHHEHITTISRTHHEHITTI 178
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = -1
Query: 448 HLRIRLQDRQCCFIIRQGSLLEGAGQPVVLARVRLRQGERYRDVHDDPVNFCIYAIDVVQ 269
+LR+RL D ++R LL G + L R +R E ++ + DP +CI A D V
Sbjct: 86 NLRVRLGD-----VVRFVYLLNG---DMFLVRGGMRAVE-FKVIETDPSPYCIVAPDTVI 136
Query: 268 WCKLQPI 248
C+ +P+
Sbjct: 137 HCEGEPV 143
>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2011
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 186 TVSGCEESSSHCILKRNTDATIGCSLHHCTTSIA*IQKF 302
T+SGC+ SS H + CS+ H TSIA I F
Sbjct: 1023 TMSGCDGSSEHADPHVTQSVSRCCSVPHWCTSIAWIGCF 1061
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 DCGSKLATVHNVTVSGCEESSSHCILKRNT-DATIGCSLHHCTTSIA*IQKFTGSS*TSR 326
D LA +H VT G H I K NT AT+ S + T + + ++ GS +R
Sbjct: 365 DTSIVLAWLHGVTQMGGTVGQDHAIRKCNTRSATLPRSFRNRTHATSRLRMSAGSDADTR 424
Query: 327 YRSPCRSL 350
RS+
Sbjct: 425 KNLRARSM 432
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 275 NIDRINTEVHGVIMNIPIPFP-LPESDACKDNGLTCPLKEGTLADYK 412
N D+ N EV I P P E+ CK L PLK G D K
Sbjct: 507 NADKENQEVPSAIKPAPKQRPSAKETRKCKRKALGKPLKAGLFEDKK 553
>SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 578 LKNLTKIFL*SNKVGKYYLDQFSVIRTQTKSPCSLWS 468
L + +FL SN +GK YL F V RT+ ++ WS
Sbjct: 241 LGRVATVFLPSNDIGKTYL--FDVQRTRRQAYSHAWS 275
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 181 LWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYKTAR*RVH 23
LW + + Q ++N++ +L +S M N I + G M N+K VH
Sbjct: 263 LWKSRNCEKQKVENVSESLDESCKVCMDNLIDCVLLECGHMLFNFKILTIEVH 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,509,418
Number of Sequences: 59808
Number of extensions: 420081
Number of successful extensions: 1088
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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