Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0300
         (622 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    60   5e-09
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    60   5e-09
AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    60   5e-09

>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +2

Query: 299 VHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEV 460
           VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + + V
Sbjct: 74  VHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVV 126



 Score = 29.9 bits (64), Expect = 7.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  FFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGC 200
           F + A    A AE   FKDCGS    +  V VS C
Sbjct: 8   FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPC 42


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +2

Query: 299 VHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEV 460
           VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + + V
Sbjct: 74  VHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVV 126



 Score = 29.9 bits (64), Expect = 7.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  FFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGC 200
           F + A    A AE   FKDCGS    +  V VS C
Sbjct: 8   FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPC 42


>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +2

Query: 299 VHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEV 460
           VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + + V
Sbjct: 74  VHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVV 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,043,499
Number of Sequences: 237096
Number of extensions: 1916885
Number of successful extensions: 4387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4384
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)