Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0300
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    28   4.7  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   4.7  
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    27   8.2  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 HNVTVSGCEESSSHCILKRNTDATIGCSLHHCTTSI 284
           HN T+SGCE +SS   LK + D+       +CTT I
Sbjct: 625 HNSTISGCESNSSVATLKMSIDS-------NCTTGI 653


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 244 PRSAAVYTTAQHRSHKYRSSRGHHEHPDTV 333
           P  + V+   +H  HK+     HH+H D V
Sbjct: 508 PPLSPVFEMKKHEHHKHLDQHHHHKHQDVV 537


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 244 PRSAAVYTTAQHRSHKYRSSRGHHEHPDTV 333
           P  + V+   +H  HK+     HH+H D V
Sbjct: 508 PPLSPVFEMKKHEHHKHLDQHHHHKHQDVV 537


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 244 PRSAAVYTTAQHRSHKYRSSRGHHEHPDTV 333
           P  + V+   +H  HK+     HH+H D V
Sbjct: 493 PPLSPVFEMKKHEHHKHLDQHHHHKHQDVV 522


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 211 DDSSHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYK 44
           D+  H   +     +S  P+S ++  S LAK  AA  +     ++  F ++K  Y+
Sbjct: 11  DEYQHKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQ 66


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +3

Query: 66  PNLILSTKMLFFITAAVLLASAEA-KFFKDCG---SKL--ATVHNVTVSGCEESSSHCIL 227
           P+L + T     I    L AS ++ K  K  G   SKL  + +++ TVSG E +S + I 
Sbjct: 516 PSLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKSPMYSATVSGKEATSGNRIA 575

Query: 228 KRNTDATIGCSLHHCT 275
           ++ T    G    HCT
Sbjct: 576 RKLTPGLDGLKSSHCT 591


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 284 RINTEVHGVIMNIPIPFPLPESDACKD 364
           RI+ E +GV + IP+     E D C+D
Sbjct: 258 RISIETYGVFLTIPLELIKTELDICED 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,595
Number of Sequences: 27780
Number of extensions: 299571
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)