Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0300
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    25   0.60 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   0.79 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   0.79 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   0.79 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.79 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    24   1.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   1.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.5  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 161 QTSDSPQRDGERMRRVVQSLYTEEKHRRHDRLQFTPLHNIDRINTEVHGVIMNIPIPFPL 340
           ++ D  +R+  +  +++ SL  +  H  ++  +    +NI+ I        + +P+P P+
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQ------IPVPVPIPV 119

Query: 341 P 343
           P
Sbjct: 120 P 120


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 161 QTSDSPQRDGERMRRVVQSLYTEEKHRRHDRLQFTPLHNIDRINTEVHGVIMNIPIPFPL 340
           ++ D  +R+  +  +++ SL  +  H  ++  +    +NI+ I        + +P+P P+
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQ------IPVPVPVPV 119

Query: 341 P 343
           P
Sbjct: 120 P 120


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 161 QTSDSPQRDGERMRRVVQSLYTEEKHRRHDRLQFTPLHNIDRINTEVHGVIMNIPIPFPL 340
           ++ D  +R+  +  +++ SL  +  H  ++  +    +NI+ I        + +P+P P+
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQ------IPVPVPVPV 119

Query: 341 P 343
           P
Sbjct: 120 P 120


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 161 QTSDSPQRDGERMRRVVQSLYTEEKHRRHDRLQFTPLHNIDRINTEVHGVIMNIPIPFPL 340
           ++ D  +R+  +  +++ SL  +  H  ++  +    +NI+ I        + +P+P P+
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQ------IPVPVPVPV 119

Query: 341 P 343
           P
Sbjct: 120 P 120


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 161 QTSDSPQRDGERMRRVVQSLYTEEKHRRHDRLQFTPLHNIDRINTEVHGVIMNIPIPFPL 340
           ++ D  +R+  +  +++ SL  +  H  ++  +    +NI+ I        + +P+P P+
Sbjct: 299 RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQ------IPVPVPVPV 352

Query: 341 P 343
           P
Sbjct: 353 P 353


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 415 NTAYPEVLS*GDSGSMWE-LQSEHGD 489
           NT +  V S  D G  WE L+ E GD
Sbjct: 88  NTIFTNVASTSDGGIFWEGLEKEVGD 113


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ERMRRVVQSLYTEEKHRRHDRLQ 259
           ER+RR  + +  +E+ R H+RL+
Sbjct: 34  ERLRRRREWMIQQEREREHERLK 56



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRL 256
           R +  +S + DGER     +S   ++K RR+D+L
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQL 271


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  FIDPNLILSTKMLFFITAAVLLASAEA 137
           F   NLIL T ++ F+   V    AEA
Sbjct: 235 FYTVNLILPTVLISFLCVLVFYLPAEA 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,335
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)