Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0300
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putativ...    31   0.81 
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    30   1.4  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    29   3.3  
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn...    28   4.3  
At3g45210.1 68416.m04879 expressed protein contains Pfam profile...    28   5.7  

>At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putative
           similar to coclaurine N-methyltransferase [Coptis
           japonica] GI:16754879
          Length = 355

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = -1

Query: 478 HFGAPTYFHCHLRIRLQDRQCCFIIRQGSLLEGAGQPVV---LARVRLRQGERYRDVHDD 308
           H+  PT F  H   R     CC+     S LE AG+ ++     R ++  G+   D+   
Sbjct: 80  HYELPTAFFEHALGRNIKYSCCYYSNDSSSLEEAGEAMLALSCERAKVEDGQSVLDIGCG 139

Query: 307 PVNFCIYAIDVVQWCKLQPIVAS 239
             +  +Y       CKL  I  S
Sbjct: 140 WGSLTLYIARKYSKCKLTGICNS 162


>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 TQTPRSAAVYTTAQHRSHKYRSSRGHHEHPDTVPP 339
           T    + A++    HR  K+R  R HH+HP   PP
Sbjct: 57  TAIESNKAIHEKHHHRRKKWRQRR-HHKHPPPPPP 90


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 372 SPLSLHASDSGRGNGIGMFMMTP*TSVFMRSMLCSGVNCSRSWRLCFSSVYNDWTT 205
           +PLS HAS SG G+G G   +    +  +R  L       R      +S+   W T
Sbjct: 54  TPLSSHASRSGNGSGSGQLTVVDLLAAVLRKSLVMSCAMERGEDDVVASMDIGWPT 109


>At1g22800.1 68414.m02848 expressed protein similar to Biotin
           synthesis protein bioC. {Serratia marcescens}
           (SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
           come from this gene
          Length = 355

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 72  LILSTKMLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATI 251
           L+   K+L   TA    A  ++ F  + G+  AT   + ++G  E SSH   KR   AT+
Sbjct: 283 LLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATV 342


>At3g45210.1 68416.m04879 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 148

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 202 SHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNN 92
           S P TVT  TVAS  P +++N +  L K     ++N+
Sbjct: 60  SSPATVTTTTVASSLPMNVQNWSKILGKENRKSIEND 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,651
Number of Sequences: 28952
Number of extensions: 278210
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)