Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0299
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 150 5e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 150 5e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 150 5e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 149 7e-37
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 148 2e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 147 3e-36
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 146 5e-36
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 146 5e-36
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 146 9e-36
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 78 4e-15
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 78 4e-15
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 77 6e-15
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 77 6e-15
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 77 6e-15
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 77 6e-15
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 75 3e-14
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 64 6e-11
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 1e-10
At4g37190.1 68417.m05265 expressed protein 31 0.40
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 0.70
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 30 0.93
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 29 1.2
At4g13030.2 68417.m02034 expressed protein 28 2.8
At4g13030.1 68417.m02033 expressed protein 28 2.8
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 3.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 5.0
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 27 5.0
At4g18090.1 68417.m02691 hypothetical protein 27 6.6
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 6.6
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 27 8.7
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 8.7
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 27 8.7
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 27 8.7
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 150 bits (363), Expect = 5e-37
Identities = 67/74 (90%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDSVRSGP+GQIFRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 115 bits (276), Expect = 2e-26
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 150 bits (363), Expect = 5e-37
Identities = 67/74 (90%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGPFGQIFRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 118 bits (283), Expect = 3e-27
Identities = 53/70 (75%), Positives = 57/70 (81%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 150 bits (363), Expect = 5e-37
Identities = 67/74 (90%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDSVRSGP+GQIFRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 115 bits (277), Expect = 1e-26
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (362), Expect = 7e-37
Identities = 66/74 (89%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGPFGQIFRPD FVFGQSGAGNNWAKGHYTEGAEL D+VLDVVRKEA
Sbjct: 66 LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 126 ENCDCLQGFQVCHS 139
Score = 120 bits (288), Expect = 7e-28
Identities = 54/71 (76%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 241
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 242 VPRATSSTWSP 274
VPRA P
Sbjct: 61 VPRAVLMDLEP 71
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 148 bits (359), Expect = 2e-36
Identities = 65/74 (87%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGP+GQIFRPD FVFGQSGAGNNWAKGHYTEGAEL D+VLDVVRKEA
Sbjct: 66 LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 126 ENCDCLQGFQVCHS 139
Score = 124 bits (299), Expect = 3e-29
Identities = 54/71 (76%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 241
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 242 VPRATSSTWSP 274
VPRA P
Sbjct: 61 VPRAVLMDLEP 71
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 147 bits (357), Expect = 3e-36
Identities = 65/74 (87%), Positives = 71/74 (95%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDSVR+GP+GQIFRPD FVFGQSGAGNNWAKGHYTEGAEL D+VLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 121 bits (291), Expect = 3e-28
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 245 PRA 253
PRA
Sbjct: 61 PRA 63
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 5e-36
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGP+GQ FRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 120 bits (290), Expect = 4e-28
Identities = 53/70 (75%), Positives = 58/70 (82%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 5e-36
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGP+GQ FRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+CDCLQGFQ+ HS
Sbjct: 125 ENCDCLQGFQVCHS 138
Score = 120 bits (290), Expect = 4e-28
Identities = 53/70 (75%), Positives = 58/70 (82%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 146 bits (353), Expect = 9e-36
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEA 435
L+DLEPGTMDS+RSGPFGQIFRPD FVFGQSGAGNNWAKGHYTEGAEL DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 436 ESCDCLQGFQLTHS 477
E+ DCLQGFQ+ HS
Sbjct: 125 ENSDCLQGFQVCHS 138
Score = 120 bits (289), Expect = 5e-28
Identities = 54/70 (77%), Positives = 58/70 (82%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 244
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 245 PRATSSTWSP 274
PRA P
Sbjct: 61 PRAVLMDLEP 70
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD VRK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 238
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD VRK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 238
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 56.4 bits (130), Expect = 9e-09
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 238
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 56.4 bits (130), Expect = 9e-09
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 238
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 238
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 238
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 74.9 bits (176), Expect = 3e-14
Identities = 32/68 (47%), Positives = 48/68 (70%)
Frame = +1
Query: 259 VDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+ D+ L+ +RK A+
Sbjct: 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLAD 127
Query: 439 SCDCLQGF 462
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 238
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 239 YVPRA 253
+VPRA
Sbjct: 61 HVPRA 65
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 63.7 bits (148), Expect = 6e-11
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPD-IFVFGQSG-AGNNWAKGHYTEGAELDDSVLDVVRK 429
L+DLEP ++ +++G + ++ + IFV G AGNNWA G Y +G +++ ++D++ +
Sbjct: 66 LIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124
Query: 430 EAESCDCLQGFQLTHS 477
EA+ D L+GF L HS
Sbjct: 125 EADGSDSLEGFVLCHS 140
Score = 58.4 bits (135), Expect = 2e-09
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +2
Query: 68 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 247
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 248 RA 253
RA
Sbjct: 63 RA 64
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 LVDLEPGTMDSVRSGPFGQIFRPD-IFVFGQSG-AGNNWAKGHYTEGAELDDSVLDVVRK 429
L+DLEP ++ +++G + ++ + IF+ G AGNNWA G Y +G +++ ++D++ +
Sbjct: 66 LIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124
Query: 430 EAESCDCLQGFQLTHS 477
EA+ D L+GF L HS
Sbjct: 125 EADGSDSLEGFVLCHS 140
Score = 58.4 bits (135), Expect = 2e-09
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +2
Query: 68 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 247
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 248 RA 253
RA
Sbjct: 63 RA 64
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.1 bits (67), Expect = 0.40
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 65 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 232
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 233 GKYVPRATSSTWSPAPWTLSA 295
Y PR S A T+S+
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 0.70
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 418 VVRKEAESCDCLQGFQLTHS 477
VVRKEAE+C+CLQ F ++ S
Sbjct: 7 VVRKEAENCNCLQVFFVSGS 26
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 29.9 bits (64), Expect = 0.93
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -1
Query: 268 PSRRGGAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL 95
P R+ H++ + F+ ++ L Q V +GT GV+ + D+LP S D VA L
Sbjct: 6 PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63
Query: 94 ------TSLDMYDFPHFVL 56
+ +YD H VL
Sbjct: 64 LKSAKIRNTRIYDADHSVL 82
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 304 FGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAESC 444
F + D+F+ +S +G G + + DDS KE++SC
Sbjct: 545 FVSLSNDDVFLSAESSSGEESPMGELLDPLDPDDSYSPCTEKESDSC 591
>At4g13030.2 68417.m02034 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 199 AHQCILQ*SLRRQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGH 378
+H +L+ S R+ +A ++ PG+ V+ + I + G GAG +
Sbjct: 64 SHDLLLRTSKRKLRQARNEILSYTPGSWSDVKLSDYNIPKTTSIMLVGPKGAGKSSLVNK 123
Query: 379 YTEGAELDDSVLD 417
T E D +LD
Sbjct: 124 ITRVIEDDAFLLD 136
>At4g13030.1 68417.m02033 expressed protein
Length = 481
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 199 AHQCILQ*SLRRQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGH 378
+H +L+ S R+ +A ++ PG+ V+ + I + G GAG +
Sbjct: 66 SHDLLLRTSKRKLRQARNEILSYTPGSWSDVKLSDYNIPKTTSIMLVGPKGAGKSSLVNK 125
Query: 379 YTEGAELDDSVLD 417
T E D +LD
Sbjct: 126 ITRVIEDDAFLLD 138
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 235 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 56
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 71 EIVHIQAGQCGNQIGAKFWEIISD 142
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 472 VSVGIPGGNHTIPLPFERRLRLNRRAQHPPCSVPW 368
VS G+PG HT P + ++ +++ P S PW
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW 170
>At4g18090.1 68417.m02691 hypothetical protein
Length = 278
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 274 GTMDSVRSGPFGQIFRPDIFVFGQSGAGNNWAKGHYTEGAELDDSVLDVVRKEAE 438
G D R G + + + G+ +W + Y G L+D + D +R++AE
Sbjct: 204 GAEDPGRCGQVDEFIEKILEEVEKDGSYLDWIRDSYVFGGLLEDMIRDRLREKAE 258
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 86 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 178
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 113 GAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 247
G + W I+ + TG Y DL ER+++ +++A +Y P
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKP 89
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 165 PVGSMPCSSEMISQNLAPIW 106
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 369 GPVVAGAGLSEDKDVRTEDLSERSRADRVH 280
GP G G + +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 369 GPVVAGAGLSEDKDVRTEDLSERSRADRVH 280
GP G G + +LSER R DR++
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,515
Number of Sequences: 28952
Number of extensions: 234883
Number of successful extensions: 734
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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