Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0298
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 73 5e-14
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 5e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 39 6e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 6e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.004
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.016
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.022
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.029
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.050
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.087
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 32 0.087
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.20
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.27
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.35
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.35
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.61
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.61
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.5
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.5
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 3.3
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 5.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 7.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 10.0
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 10.0
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 25 10.0
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 10.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 72.5 bits (170), Expect = 5e-14
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K + PK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 436 H-----GKIFVGGLSSQISDDEIRNFFSE 507
K+FVGG+ +++E RNFF++
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQ 269
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +L+ + DK + +GF F+T+E+E V + P I GK V+VKRATPK
Sbjct: 271 GRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 77 ANNDNFXEDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELR 253
+ NDN+ E+ + L G+ G +S + N+ E +P +D K+F+GGL+WETTD LR
Sbjct: 127 SKNDNYNEN---QSALTGS---GAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLR 180
Query: 254 VILE 265
E
Sbjct: 181 DYFE 184
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +G + + D +TGR RGF F+ ++ +++ M+ TI+ K V K+A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +L+ + D T + +GF F+TF++ VN+++ + + + GK +D KRA P+
Sbjct: 187 GEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPR 240
Score = 31.5 bits (68), Expect = 0.12
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +1
Query: 439 GKIFVGGLSSQISDDEIRNFFSE 507
GK+F+GGL+ + +DD +R++F +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQ 185
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 396
FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV 411
F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVTPKK 423
HF + G + + + D TG +GFA+I F P + + ++ + KVTPK+
Sbjct: 74 HFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 387
+FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 289 YFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTINNKK 408
HF G++ S+ + TD +GR +G+AF+ F P++ I K + HTI ++
Sbjct: 111 HFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKER 162
Score = 28.7 bits (61), Expect = 0.81
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITF 584
G + V +P DKT ++KG+ F+ F
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 393
HFG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 247 HFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 104 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 253
I ++ +G S ++ ++ LFVG L +ETTD +L+
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLK 245
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +1
Query: 253 CHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKA 432
C F +GE IN+ D TG+S+GFAF+ ++ S V+A T N K+ + +
Sbjct: 49 CVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS--TVLAVDNMT--NVKLLDRLVRV 104
Query: 433 RH 438
H
Sbjct: 105 DH 106
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 223 ELGDHR*GAPCHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
E+ D R A F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKA--EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITF-ESEPVVNDLLKTPKRPIGGK 644
G + +V MP DK N KGF +I F +++ V L+ +P G+
Sbjct: 347 GQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGR 392
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F YG IE I V + TG+S G+AF+VF+
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.050
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 411
F G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
HF +G + + DP T RS G FI F+
Sbjct: 296 HFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.087
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
F +G+I S V D TG S +AFI F ES++K
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.9 bits (69), Expect = 0.087
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 363
HF ++GE+ +++K +P TG S G I F SI
Sbjct: 113 HFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 217 WAELGDHR*GAPCHFGAYGEIESINVKTDPNT 312
WA G + +P + Y E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.27
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +G I+ + + D TGR++GFAF+ +
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.35
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 INNKKVT-PKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
+NN K++ P + + I+VG + S++SD+EI FS+
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSK 39
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
F +G I S + PN+G S+G+ F+ F+ E+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVTPKKAKAR 435
F +G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 436 HGK 444
+
Sbjct: 501 EDR 503
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F +G + + + +P T SRGF F+ F E
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 364 DKVMAAGEHTINNKKV---TPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
D+V E T +KK P+ ++ +FV G++S++ +DE++ FS+
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSK 123
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVF 345
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.81
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 415 PKKAKARHGKIFVGGLSSQISDDEIRNFF 501
P+ A + +FVGGLS +S++E++ F
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLF 323
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGG 641
Q++ +G ++V++ ++ G+CF+ F S + + +PI G
Sbjct: 110 QQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPG 160
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 322 RGFAFIVFKAPESIDKVMAAGEHTINNKK 408
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 510 QFTEEVSDFII*DLTAESSDKNLPMSCFSLLW 415
+FTE+VSD +L A + +NLPM+ +++W
Sbjct: 612 RFTEDVSDT---ELIAMNELRNLPMASSAIIW 640
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 405
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 632 WSFGSLKQIIYDWLRFKCDETEALSLVLCFVKGHLH 525
W+F SL I +L F+ + L +V CF H
Sbjct: 109 WAFSSLWPKIISFLAFRSKDVVLLGIVSCFASIFFH 144
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 355 ESIDKVMAAGEHTINNKKVTPKKAKARHGKIFVGGLSSQISDDEIRNFFSELELS*KWRC 534
+ ++ + A H + TP + +A ++FVG LS+ EIR+ F + K
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 535 PLTKQRTKER 564
P + R R
Sbjct: 76 PFRRVRRGTR 85
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 152 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRVILE 265
D+ H SAE P + DD ++FVG LS T E+R + E
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFE 65
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 325 GFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAK 429
G AF+ F E +DK + T++++++ +KA+
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 429 FSLLWGYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 268
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 436 HGKIFVGGLSSQISDDEIRNFFSE 507
H ++FVG L + ++D+ + FSE
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSE 52
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
F G + + D +GRS+G A++ F +S+ +A
Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 385 EHTINNKKVTPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
E TI K K + + G ++VG L + ++R +FS+
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQ 127
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 465 AESSDKNLPMSCFSLLWGYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 286
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 285 TL 280
TL
Sbjct: 1251 TL 1252
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFFS 504
+I+VGGLSS I ++ + FS
Sbjct: 6 RIYVGGLSSSIESSDLESRFS 26
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 567 FCFITFESEPVVNDLLKTPKRPIGG 641
F I+ + +P+ +L K+P P+GG
Sbjct: 1074 FSHISEQIDPIYKELTKSPAFPLGG 1098
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 610 KSFTTGSDSNVMKQKPFLWFFVLSKGISTSKI 515
KS+ GS V+ QKPF +F S + T K+
Sbjct: 209 KSYEAGSLGIVLNQKPFYFF---SPAVPTGKV 237
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 467 VKSQMMKSETSSVNWNYLRSGDAL 538
V S MMKS T+ +NW+YL GD++
Sbjct: 441 VGSMMMKS-TTLINWSYL--GDSI 461
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 610 KSFTTGSDSNVMKQKPFLWFFVLSKGISTSKI 515
KS+ GS V+ QKPF +F S + T K+
Sbjct: 209 KSYEAGSLGIVLNQKPFYFF---SPAVPTGKV 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,332
Number of Sequences: 5004
Number of extensions: 54295
Number of successful extensions: 196
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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