Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0298
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.50 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 386 SPAAMTLSIDSGALNTM 336
           SPA  ++S+DSG++NT+
Sbjct: 555 SPAIESISVDSGSINTV 571



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 ITTDNQLNGNAENGGGDSQDHNSAEA 181
           +T+ + +N N+ NG  +S   +S+ A
Sbjct: 532 LTSSSNVNNNSGNGNTNSSARDSSPA 557


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 113 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 205
           DN+ NGN +N  G+ Q+ N      ++D+++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNKR 515



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 80  NNDNFXEDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 205
           N +   ++    N  N NA N   D+Q+ N      ++D+R+
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQ 465



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 113 DNQLNGNAENGGGDSQDHNS 172
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +2

Query: 80  NNDNFXEDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 202
           N +   ++    N+ N N  NG   + + N+     R+D++
Sbjct: 496 NGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQ 536



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 DNQLNGNAENGGGDSQDHNSAE 178
           DNQ N N +N   D+Q H+S++
Sbjct: 522 DNQNNQN-DNNRNDNQVHHSSK 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  NNDNFXEDITTDNQLNGNAENGGGDSQDHNSAE 178
           NN+N   +   +N  N N  NG G S ++N+ +
Sbjct: 240 NNNNNNNNNNNNNGANDNG-NGNGASNNNNNGD 271


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 652 STSFPPIGLLGVLSKSFTTGSDSNV 578
           + + PP  +L    K+F  GSD+ V
Sbjct: 674 TVNVPPRWILEPTDKAFAQGSDARV 698


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,840
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)