Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0298
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 69 2e-12
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 54 1e-07
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 51 8e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 51 8e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 51 8e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 45 4e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 43 2e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 41 9e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 41 9e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 41 9e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.001
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.002
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 0.002
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 38 0.005
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.005
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.005
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.005
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.006
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.006
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.006
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.011
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.011
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 37 0.014
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 37 0.014
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 37 0.014
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 37 0.014
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.014
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.014
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 37 0.014
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.014
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 37 0.014
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 37 0.014
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.019
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.019
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 36 0.019
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.025
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 36 0.025
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 36 0.025
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 36 0.025
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.025
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.033
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.033
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.033
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.033
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 35 0.043
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 35 0.043
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 35 0.043
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.043
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.043
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.043
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.043
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.057
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.057
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.057
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.057
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.057
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 35 0.057
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.057
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.075
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 34 0.075
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 34 0.075
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.075
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.075
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.075
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.100
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 34 0.100
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.100
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.13
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.13
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.13
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.13
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.17
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.17
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.17
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.23
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.23
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.30
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.30
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.30
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.30
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 32 0.30
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 32 0.40
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.40
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 0.40
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 32 0.40
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 32 0.40
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.40
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.40
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.40
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.53
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 31 0.53
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 31 0.70
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.70
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.70
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.70
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 0.93
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 31 0.93
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.93
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 30 1.2
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 30 1.2
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 1.2
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 30 1.2
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.6
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 30 1.6
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.6
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 2.1
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 2.1
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.1
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 2.8
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 3.8
At3g30820.1 68416.m03953 hypothetical protein 29 3.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 5.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 5.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 5.0
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.0
At3g18810.1 68416.m02389 protein kinase family protein contains ... 28 5.0
At2g47390.1 68415.m05915 expressed protein 28 5.0
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 5.0
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 8.7
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.7
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 8.7
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 27 8.7
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 27 8.7
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 8.7
At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA... 27 8.7
At3g17360.1 68416.m02218 kinesin motor protein-related similar t... 27 8.7
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 27 8.7
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 8.7
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 8.7
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 8.7
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA--K 429
HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V K+ K
Sbjct: 38 HFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPK 96
Query: 430 ARHG---------KIFVGGLSSQISDDEIRNFFSE 507
G KIFVGG+ S +++DE+++FF++
Sbjct: 97 GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVTPK 420
F YG + V D T RSRGF F++F + E +D++++ G + + KK PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 421 KAKAR 435
K+ R
Sbjct: 189 KSLNR 193
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL-KTPKRPIGGKDVDVKRATPK 674
G ++E ++ D N+ +GF F+ F+SE VV++LL K + V++K+A PK
Sbjct: 133 GNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I + + D+ Q +GF FITF ++P V D + I GK V++KR PK
Sbjct: 43 GEITDSVIMRDRHTGQPRGFGFITF-ADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA--K 429
HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V K+ K
Sbjct: 38 HFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPK 96
Query: 430 ARHG---------KIFVGGLSSQISDDEIRNFFSE 507
G KIFVGG+ S +++DE+++FF++
Sbjct: 97 GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 384
F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I + + D+ Q +GF FITF ++P V D + I GK V++KR PK
Sbjct: 43 GEITDSVIMRDRHTGQPRGFGFITF-ADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL 614
G ++E ++ D N+ +GF F+ F+SE VV++LL
Sbjct: 133 GNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
HFG YGEI + D TG+ RGF F+ + +DKV+ H I K+V K+ R
Sbjct: 61 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPR 119
Query: 436 HG---------KIFVGGLSSQISDDEIRNFFSE 507
KIFVGG+ S + DDE + FF +
Sbjct: 120 GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVTPKKAKAR 435
F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKR-PIGGKDVDVKRATPK 674
G + E ++ D + + +GF F+T+ESE +V+ LL R + G V++K+A PK
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I + + D+ Q +GF F+T+ VV+ +++ I GK V++KR P+
Sbjct: 66 GEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 98 EDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKE 247
ED D + + + E+ SQ H+ G D K+FVGGL+ ETT E
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAE 57
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 411
+FG +GE+ + TD TG RGF F+ F +KV+ +H I+++KV
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPR 143
Query: 412 ----TPKKAKARHGKIFVGGLSSQISDDEIRNFF 501
T KA ++ KIFVGGL + +DE++N+F
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVTPKKAKA 432
+F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V K+A+
Sbjct: 176 YFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP 235
Query: 433 R 435
+
Sbjct: 236 K 236
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RPIGGKDVDVKRATPK 674
G I+E ++ +D + +GF F+TF++E V+ L K +G K V++KRA PK
Sbjct: 181 GDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 107 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETT 238
T D++ NG A + GG S DH + + KLFVGG+SWETT
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETT 78
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +++ + D+ +GF F+TF V +L+ I + VD+KR P+
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPR 143
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 53.6 bits (123), Expect = 1e-07
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 25/107 (23%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
HF YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++V K+A +R
Sbjct: 25 HFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSR 83
Query: 436 H-------------------------GKIFVGGLSSQISDDEIRNFF 501
KIFVGGL ++D+E R +F
Sbjct: 84 EEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF 130
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G + +V + +D+ N+ +GF F++F+SE V+ +L + GK V+VKRA PK
Sbjct: 134 GPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V K+A +
Sbjct: 129 YFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Query: 436 HGKIFVGGLS 465
GG S
Sbjct: 189 DANPGGGGRS 198
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRA 665
G + + + DK + +GF F+ F S+P V D + K I ++VDVKRA
Sbjct: 30 GEVSQAIVMRDKLTGRPRGFGFVIF-SDPSVLDRVLQEKHSIDTREVDVKRA 80
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 194 DDRKLFVGGLSWETTDKELR 253
D KLFVGG+SWET + +LR
Sbjct: 4 DQGKLFVGGISWETDEDKLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 439 GKIFVGGLSSQISDDEIRNFFS 504
GK+FVGG+S + +D++R F+
Sbjct: 6 GKLFVGGISWETDEDKLREHFT 27
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 52.0 bits (119), Expect = 4e-07
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 28/112 (25%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+FG YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V KKA R
Sbjct: 34 YFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPR 92
Query: 436 -------------------HG---------KIFVGGLSSQISDDEIRNFFSE 507
HG KIFVGGL S I++ E +N+F +
Sbjct: 93 DDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQ 144
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/57 (42%), Positives = 32/57 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D NT R RGF FI F + ES+D V+ H +N K V K+A
Sbjct: 141 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GTI +V + +D + +GF FITF+SE V+ +L + GK V+VKRA PK
Sbjct: 146 GTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G ++E + D+T + +GF FI F ++P V + + K I G+ V+ K+A P+
Sbjct: 39 GDLVEAVIMRDRTTGRARGFGFIVF-ADPSVAERVIMDKHIIDGRTVEAKKAVPR 92
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SW+T ++ L+
Sbjct: 16 KLFIGGISWDTDEERLQ 32
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 50.8 bits (116), Expect = 8e-07
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 436 -------------------HG------KIFVGGLSSQISDDEIRNFFSE 507
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 439 GKIFVGGLSSQISDDEIRNFFS 504
GK+F+GG+S ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 50.8 bits (116), Expect = 8e-07
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 436 -------------------HG------KIFVGGLSSQISDDEIRNFFSE 507
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 439 GKIFVGGLSSQISDDEIRNFFS 504
GK+F+GG+S ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 50.8 bits (116), Expect = 8e-07
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 436 -------------------HG------KIFVGGLSSQISDDEIRNFFSE 507
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 439 GKIFVGGLSSQISDDEIRNFFS 504
GK+F+GG+S ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 GAPCHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN-----KK 408
G + +G++E V D +TGRSRGF ++ F + E + GEH + N K
Sbjct: 18 GLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKV 76
Query: 409 VTPKKAKARHGK----IFVGGLSSQISDDEIRNFF 501
TPK+ + K IFV + S +S+ + R+ F
Sbjct: 77 ATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHF 111
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I ++ MP D Q +G FITF S V DL++ +GG V V RATPK
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPK 168
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA----AGEHTINNKKVTPKK 423
HF YGEI + + D N+ + RG FI F + +S++ +M G T+ + TPK+
Sbjct: 110 HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKE 169
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+FG +G I+ + DP RGF F+ F D+V A H I ++V A
Sbjct: 259 YFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEVAIDSATPL 317
Query: 436 HGKIFVGGLSSQISDDEIRNF 498
G SS +S F
Sbjct: 318 DEAGPSAGASSMLSSSRPEYF 338
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATP 671
G I + +P D ++ +GF F+TF +E V D + I G++V + ATP
Sbjct: 264 GHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATP 316
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 540 DKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
D++ + +GF ++TF S + LK + +G + ++VK ATPK
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPK 80
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ V K+A +R
Sbjct: 25 YFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSR 83
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F YG + + D T R RGF F+ F + +S+D V+ H +N K+V K+A
Sbjct: 129 YFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G + + + D+T + +GF F++F+SE V+ +L + GK V+VKRA PK
Sbjct: 134 GPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRA 665
G +L+V + +K + +GF F+ F S+P V D + K I +DVDVKRA
Sbjct: 30 GEVLQVTVMREKATGRPRGFGFVAF-SDPAVIDRVLQDKHHIDNRDVDVKRA 80
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 194 DDRKLFVGGLSWETTDKELR 253
D KLF+GG+SW+T + LR
Sbjct: 4 DQGKLFIGGISWDTDENLLR 23
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 21/105 (20%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V KKA R
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPR 83
Query: 436 HG---------------------KIFVGGLSSQISDDEIRNFFSE 507
KIFVGGL+S +++ E + +F++
Sbjct: 84 DDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 128
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V K A
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I +V + +D + +GF FI+++SE V+ +L+ + GK V+VK A PK
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +LE + D+ + +GF F+ F ++P V + + K I GK V+ K+A P+
Sbjct: 30 GEVLEAVIMKDRATGRARGFGFVVF-ADPNVAERVVLLKHIIDGKIVEAKKAVPR 83
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SWET++ LR
Sbjct: 7 KLFIGGISWETSEDRLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFF 501
K+F+GG+S + S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 APGRDDDRKLFVGGLSWETTDKELR 253
+PG + +K+FVGGL+ T+ E +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFK 123
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 21/105 (20%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V KKA R
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPR 83
Query: 436 HG---------------------KIFVGGLSSQISDDEIRNFFSE 507
KIFVGGL+S +++ E + +F++
Sbjct: 84 DDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 128
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V K A
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I +V + +D + +GF FI+++SE V+ +L+ + GK V+VK A PK
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +LE + D+ + +GF F+ F ++P V + + K I GK V+ K+A P+
Sbjct: 30 GEVLEAVIMKDRATGRARGFGFVVF-ADPNVAERVVLLKHIIDGKIVEAKKAVPR 83
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
KLF+GG+SWET++ LR
Sbjct: 7 KLFIGGISWETSEDRLR 23
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFF 501
K+F+GG+S + S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 APGRDDDRKLFVGGLSWETTDKELR 253
+PG + +K+FVGGL+ T+ E +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFK 123
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA--- 426
+F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V KKA
Sbjct: 25 YFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPR 83
Query: 427 --------------------KARHGKIFVGGLSSQISDDEIRNFFSE 507
R KIFVGGL S +++ + + +F +
Sbjct: 84 DDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQ 130
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GT +V + +D + +GF FIT++SE V +L + GK V+VKRA PK
Sbjct: 132 GTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G ++E + D+T + +GF F+ F ++P V +++ T K I G+ V+ K+A P+
Sbjct: 30 GEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPR 83
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 188 RDDDRKLFVGGLSWETTDKELR 253
+ D+ KLF+GG+SW+T ++ L+
Sbjct: 2 QSDNGKLFIGGISWDTNEERLK 23
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 131 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILE 265
N N S S PGR RK+FVGGL T+ + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 436 HGKIFVGGLSSQISDDEIRNFFS 504
+GK+F+GG+S +++ ++ +FS
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFS 27
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA--- 426
+F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V KKA
Sbjct: 25 YFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPR 83
Query: 427 --------------------KARHGKIFVGGLSSQISDDEIRNFFSE 507
R KIFVGGL S +++ + + +F +
Sbjct: 84 DDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQ 130
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
GT +V + +D + +GF FIT++SE V +L + GK V+VKRA PK
Sbjct: 132 GTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G ++E + D+T + +GF F+ F ++P V +++ T K I G+ V+ K+A P+
Sbjct: 30 GEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPR 83
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 188 RDDDRKLFVGGLSWETTDKELR 253
+ D+ KLF+GG+SW+T ++ L+
Sbjct: 2 QSDNGKLFIGGISWDTNEERLK 23
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 131 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILE 265
N N S S PGR RK+FVGGL T+ + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 436 HGKIFVGGLSSQISDDEIRNFFS 504
+GK+F+GG+S +++ ++ +FS
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFS 27
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V K A
Sbjct: 52 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G I +V + +D + +GF FI+++SE V+ +L+ + GK V+VK A PK
Sbjct: 57 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 367 KVMAAGEHTINNKKVTPKKAK---ARHGKIFVGGLSSQISDDEIRNFFSE 507
K + +H + NK + + + KIFVGGL+S +++ E + +F++
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 55
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 APGRDDDRKLFVGGLSWETTDKELR 253
+PG + +K+FVGGL+ T+ E +
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFK 50
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 428 FESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKP 487
Query: 439 GK 444
GK
Sbjct: 488 GK 489
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
HF YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++
Sbjct: 43 HFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
K+FVGGL+WET + LR
Sbjct: 25 KVFVGGLAWETQSETLR 41
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRAT 668
G ILE + DK + KG+ F+TF P I G+ + A+
Sbjct: 48 GEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLAS 100
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 43 HFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
K+FVGGL+WET + LR
Sbjct: 25 KVFVGGLAWETQSETLR 41
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
F YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 54 FSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +++ ++ D+ + +GF F+TF S ++ ++ + + G+ + V AT +
Sbjct: 58 GEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
HF AYG++E + D TG+SRGFA V+K E +A I+ K + K A
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+ + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 439 GKIFVGGLSSQISDDEIRNFF 501
G SQI+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRA 665
G + E + FDK + +GF +++ L P + I GK ++ K A
Sbjct: 191 GDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
HF AYG++E + D TG+SRGFA V+K E +A I+ K + K A
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+ + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 439 GKIFVGGLSSQISDDEIRNFF 501
G SQI+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRA 665
G + E + FDK + +GF +++ L P + I GK ++ K A
Sbjct: 191 GDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVTPKKAKA 432
HF G++ +++ DP T SRGF FI K+ ++ + + +H++ + +T +KA+
Sbjct: 94 HFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARR 153
Query: 433 RHGK 444
R G+
Sbjct: 154 RRGR 157
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F YG++ + D TGRSRGF F+ FK +++ D + ++ + +T +A++R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RPIGGKDVDVKRA 665
G +++ ++ D+ + +GF F+TF+ E + D ++ + + G+ + V A
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F YG++ + D TGRSRGF F+ FK +++ D + ++ + +T +A++R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RPIGGKDVDVKRA 665
G +++ ++ D+ + +GF F+TF+ E + D ++ + + G+ + V A
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +1
Query: 244 GAPCHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKK 423
G +F +GEI V D T RS+GF F+ F+ ES + HTI+ + V K
Sbjct: 24 GLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKL 83
Query: 424 A 426
A
Sbjct: 84 A 84
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRA 665
G I+ ++ D + KGF F+TF + P I G+ V+ K A
Sbjct: 33 GEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
+F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 36 YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVGGL+WET E+R E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRAT 668
G ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 41 GEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIAS 93
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFFSE 507
K+FVGGL+ + DE+R +F +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQ 39
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
+F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 36 YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVGGL+WET E+R E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRAT 668
G ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 41 GEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIAS 93
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFFSE 507
K+FVGGL+ + DE+R +F +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQ 39
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVTPKKAKAR 435
F YG + V D +GRSRGF FI F +++D+ +AA ++ + +T KA+
Sbjct: 27 FEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPH 86
Query: 436 HG 441
G
Sbjct: 87 QG 88
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RPIGGKDVDVKRATP 671
G ++E ++ DK + +GF FITF+ + +++ + + G+ + V +A P
Sbjct: 31 GHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 191 DDDRKLFVGGLSWETTDKELRVILE---HTVK*RVLM 292
D + + F+GGL+W T+D+ LR E H V+ +V++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVL 40
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVT 414
F YGEIE V D TG+++GF F++FK + + + + I N+ T
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 175
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPI 635
G I E + DK + KGF F+ F++ + LK PK+ I
Sbjct: 128 GEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 176 EAPGRD-DDRKLFVGGLSWETTDKELRVILE 265
EA RD RK+FV GL WETT + L + E
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFE 125
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVT 414
F YGEIE V D TG+++GF F++FK + + + + I N+ T
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 175
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPI 635
G I E + DK + KGF F+ F++ + LK PK+ I
Sbjct: 128 GEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 176 EAPGRD-DDRKLFVGGLSWETTDKELRVILE 265
EA RD RK+FV GL WETT + L + E
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFE 125
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVT 414
F YGEI +V D +TGR++GF F++FK + + E + N+ V+
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVS 234
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATP 671
G I E + DK + KGF F+ F++ LK P++ + + V A P
Sbjct: 187 GEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARP 240
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 176 EAPGRDDD-RKLFVGGLSWETTDKELRVILE 265
E+ RD R +FV GL W+TT + L+ E
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFE 184
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
+F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 41 YFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVGGL+WET +R E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFE 43
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 31.1 bits (67), Expect(2) = 0.002
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVF 345
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA--AGEHTINNKKV------- 411
F GE+ S+ V + T +S G+ F+ F + + ++V+ +G N+ +
Sbjct: 128 FSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWAS 187
Query: 412 --TPKKAKARHG---KIFVGGLSSQISDDEIRNFFSE 507
T +K +G +FVG LS ++D + FS+
Sbjct: 188 FSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Score = 27.9 bits (59), Expect(2) = 0.002
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 358 SIDKVMAAGEHTINNKKV--TPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
S V+ AG H N + ++ + IFVGG+ + D+++R FS+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQ 343
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +V + D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 144 GRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
+F YG + V + TG+ RGF F+ F + K + H I K V +KA +
Sbjct: 25 YFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRK 83
Query: 436 H 438
H
Sbjct: 84 H 84
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 403 KKVTPKKAKARHGKIFVGGLSSQISDDEIRNFF 501
++++ +R KIFVGGLSS +++E +++F
Sbjct: 108 REMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYF 140
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESE-PVVNDLLKTPKRPIGGKDVDVKRATPK 674
G +LE + +K + +GF F+ F ++ VV L T I GK VDV++A K
Sbjct: 30 GAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT--HFILGKPVDVRKAIRK 83
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 200 RKLFVGGLSWETTDKELRVILE 265
+K+FVGGLS TT++E + E
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFE 141
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 60 FTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
HF +G+I +++ D T RSRG A+I++ PE + M
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVT 414
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 415 PKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
+ + K+FVG L +S+ E+++ FS+
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSK 128
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVT 414
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 415 PKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
+ + K+FVG L +S+ E+++ FS+
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSK 128
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +GEI +NV D T RS+G+ F+ FK ES + TI + K A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = +1
Query: 271 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARHGKIF 450
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 451 VGGLSSQISDDEIRNFFSEL 510
+G + ++DE R ++
Sbjct: 200 IGNIPKNWTEDEFRKVIEDV 219
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 277 IESINVKTDP-NTGRSRGFAFIVF 345
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
+F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 36 YFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 436 HGKIFVGGLSSQISDDEIRNFFSE 507
H K+FVGGL+ + DE+R +F +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQ 39
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELR 253
K+FVGGL+WET E+R
Sbjct: 18 KVFVGGLAWETPTDEMR 34
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRAT 668
G ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 41 GEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIAS 93
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVT 414
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 415 PKKAKARHGKI 447
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVT 414
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 415 PKKAKARHGKI 447
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F +G++ + D +GRSRGF F+ FK +++ D + ++ + +T +A++R
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
Q+ G +++ ++ D+ + +GF F+TF+ E + D ++ + GK++D
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F +G++ + D +GRSRGF F+ FK +++ D + ++ + +T +A++R
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
Q+ G +++ ++ D+ + +GF F+TF+ E + D ++ + GK++D
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F +G++ + D +GRSRGF F+ FK +++ D + ++ + +T +A++R
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
Q+ G +++ ++ D+ + +GF F+TF+ E + D ++ + GK++D
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/78 (17%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVTPKKAKARH 438
G+ GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H
Sbjct: 113 GSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH 172
Query: 439 GKIFVGGLSSQISDDEIR 492
++F+G + + +I+
Sbjct: 173 -RLFLGNVPRNWMESDIK 189
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 507 IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT 620
IG + EV + +K KG+ F+TF S+ + + + T
Sbjct: 115 IGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 116 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 253
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 116 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 253
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFI 339
HF GE+ ++V TD TG SRGFA+I
Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 346 KAPESIDKVMAAGEHTINNKKVTPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
K ++ V A + K + + +F G LS QI+ +I NFF E
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKE 406
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 259 FGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVTPKKAK 429
F A+G I S + DP+TG SRGF FI + + E+ D + + G++ ++N+++T A
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQY-LSNRQITVSYAY 190
Query: 430 ARHGK 444
+ K
Sbjct: 191 KKDTK 195
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
+F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++
Sbjct: 26 YFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRR 76
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVGGL+WET LR E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
+F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++
Sbjct: 26 YFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRR 76
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVGGL+WET LR E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNKKVTPKKAKAR 435
FG YG+I S V N GRS+GF F+ F ES ++ K + + A+ +
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Query: 436 HGKI 447
+I
Sbjct: 383 EDRI 386
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 54 FASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
FG GE+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 439 GKIFVGGLSSQISDDEIR 492
+FVG + + + +R
Sbjct: 294 DTLFVGNICKIWTPEALR 311
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
HF +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 231 HFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 28.7 bits (61), Expect = 3.8
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH--------- 390
F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 391 ---TINNKKV---TPKKA---KARHGKIFVGGLSSQISDDEIRNFFSE 507
T N +V TPKK +++H K++VG L D +RN FS+
Sbjct: 188 NPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSK 234
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVTPKKA 426
F G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
Score = 34.3 bits (75), Expect = 0.075
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------- 411
F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGP 207
Query: 412 ---TPKKAKARH-------GKIFVGGLSSQISDDEIRNFFS 504
P A A+H KI+V +S+ I ++ FFS
Sbjct: 208 VQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 411
HF G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 64 HFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.033
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----TPKK 423
F + + +N+ + T RG F+ E DKV+ ++ +NKK +P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 424 AKARHG-------KIFVGGLSSQISDDEIRNFFSE 507
K G K+FVG L +S+ E+++ FSE
Sbjct: 88 VKYADGELERLEHKLFVGMLPKNVSETEVQSLFSE 122
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGK 644
G I + + FDK + KG+ FI ++S + LK P++ IG +
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 208
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F YGEIE D +G+S+G+ FI++K+ + + I ++ + A
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS--K 217
Query: 439 GKIFVG 456
G +F G
Sbjct: 218 GPVFGG 223
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGK 644
G I + + FDK + KG+ FI ++S + LK P++ IG +
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 208
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F YGEIE D +G+S+G+ FI++K+ + + I ++ + A
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS--K 217
Query: 439 GKIFVG 456
G +F G
Sbjct: 218 GPVFGG 223
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKA 426
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGK 644
G I + + FDK + KG+ FI ++S + LK P++ IG +
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 208
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F YGEIE D +G+S+G+ FI++K+ + + I ++ + A
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLAS--K 217
Query: 439 GKIFVG 456
G +F G
Sbjct: 218 GPVFGG 223
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 363
F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVDVKRAT 668
G + + ++ D+ + KGF F+TF+ E D ++T + G+++D + T
Sbjct: 68 GEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNIT 116
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F YG+I + +TGR RGF FI F D + + NK ++ KA+ +
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Query: 436 HG 441
G
Sbjct: 92 VG 93
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRPIGGKDVDVKRATPK 674
G I E ++ + + +GF FITF +D +K R +G K + V +A PK
Sbjct: 36 GKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 197 DRKLFVGGLSWETTDKEL 250
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVTPKKAKAR 435
F YG+I + +TGR RGF FI F D + + NK ++ KA+ +
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Query: 436 HG 441
G
Sbjct: 92 VG 93
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRPIGGKDVDVKRATPK 674
G I E ++ + + +GF FITF +D +K R +G K + V +A PK
Sbjct: 36 GKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 197 DRKLFVGGLSWETTDKEL 250
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.1 bits (77), Expect = 0.043
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVF 345
HF + GEI++++V D +TG S+G A++ F
Sbjct: 424 HFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F A+G +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 239 FGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRPIGGKDVDV 656
GT+++V++ +DK ++ +GF F+T S E + IGG+ V V
Sbjct: 140 GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 439 GKIFVGGLSSQISDDEIRN 495
++ GG +++ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 535 HFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F ++GE+ + + D +GRSRGF F+ F
Sbjct: 61 FSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
HF +G I S V DP+ G SRG F+ F PE + +
Sbjct: 346 HFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 34.7 bits (76), Expect = 0.057
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Frame = +1
Query: 274 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNKK---------VTPK 420
EI S+ V + N G S G+ F+ F++ + DKV+ G N + T +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 421 KAKARHG---KIFVGGLSSQISDDEIRNFFSE 507
K +G IFVG LS +SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.7 bits (76), Expect = 0.057
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Frame = +1
Query: 274 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNKK---------VTPK 420
EI S+ V + N G S G+ F+ F++ + DKV+ G N + T +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 421 KAKARHG---KIFVGGLSSQISDDEIRNFFSE 507
K +G IFVG LS +SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 31.1 bits (67), Expect = 0.70
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 26/106 (24%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID------KVMAAGEHT----- 393
Y +++ V D NTGRS+G+ F+ F KA ++ + M G T
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 394 --------INNKKVTPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
+ N +T + + IFVGGL S ++D++++ F+E
Sbjct: 281 GYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNE 326
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
F +G+I + + +TGRSRGF FI F ++D+
Sbjct: 27 FSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RPIGGKDVDVKRATPK 674
G IL+ ++ ++ + +GF FITF +++ ++ R G + + V RA PK
Sbjct: 31 GDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 430 ARHG-KIFVGGLSSQISDDEIRNFFS 504
A+ G +IFVGGLS +++D ++ FS
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFS 28
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
FG G ++SI + +TG+ RG A+ F E + +A KK++ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 439 GK 444
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
FG G ++SI + +TG+ RG A+ F E + +A KK++ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 439 GK 444
GK
Sbjct: 731 GK 732
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 34.3 bits (75), Expect = 0.075
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVTPKKAKAR 435
F +G++ + V D +T +SRG AF+++ + E K + + I N +K+T A A
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA-AD 135
Query: 436 HGKIFVGGLSSQISDDEIRNFFSELELS*KWRCPLTKQRTKER 564
+G+ + ++ D+ R + E + CP + +ER
Sbjct: 136 NGRA-SEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.075
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAK 429
+F ++GEI + V TG S G+A+I K E +K + G H + + KA+
Sbjct: 257 YFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDVGGWDLVVGKAE 312
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVTPKKA 426
++G + N+ D TG S+G+AF V++ P D AA + +K +T ++A
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRA 451
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.100
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 271 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.9 bits (74), Expect = 0.100
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKK 423
FG YG I S V D + G+SR F F+ F+ PE + + A +N KK K+
Sbjct: 245 FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.100
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 30.7 bits (66), Expect = 0.93
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAKAR 435
F G +E V + +T +SRGF F+ E +K V +N +++T +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 436 HG-------------KIFVGGLSSQISDDEIRNFFSE 507
+I+VG L + + FSE
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 495 LLQ*IGTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRPIGGKDVDVKRATP 671
L + GT+ E+ +++ +Q +GF F+T + E + K + G+ + V RA P
Sbjct: 132 LFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAP 191
Query: 672 K 674
+
Sbjct: 192 R 192
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 152 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
FG YG+I S V D +G SR F F+ F +PE+
Sbjct: 245 FGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 277
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F YG + S V + + G SRGF F+ + PE
Sbjct: 348 FSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.5 bits (73), Expect = 0.13
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-------------DKVMAAGEHTIN 399
F ++G I S V D TGRS+G+ F+ F+ ES DK + G
Sbjct: 156 FSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR 214
Query: 400 NKKVTPKKAKA-RHGKIFVGGLSSQISDDEIRNFFSE 507
++ + R ++V L +I +DE+R F +
Sbjct: 215 QERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGK 251
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F YG + S V +P G SRGF F+ + PE
Sbjct: 352 FSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 495 LLQ*IGTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRPIGGKDVDVKRATP 671
L + GT+ E+ +++ +Q +GF F+T S + + K + + G+ + V +A P
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 228
Query: 672 K 674
+
Sbjct: 229 R 229
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVTPKKAKAR 435
F G +E V + T +SRGF F+ + E+ V + +N + +T KA R
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 436 HG-------------KIFVGGLSSQISDDEIRNFFSE 507
+++VG L + + + FSE
Sbjct: 230 GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 408
HF YG+I + +D T RS+G+ F+ FK ++ + IN ++
Sbjct: 36 HFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 56 FGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT-PKRPIGGKDVDVKRA 665
G I++ + D+ +GF F+T++S V N+ ++ + + G+ + V A
Sbjct: 60 GKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F +G++ + D +GRSRGF F+ FK
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGG 641
Q+ G +++ ++ D+ + +GF F+TF+ E + D ++ GG
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVTPKKAK 429
F + I+ + + D T SRGFAF+ F + E K + A T N K + AK
Sbjct: 478 FSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
Query: 430 ARHG 441
+ HG
Sbjct: 538 SVHG 541
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 390
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 387
F + G +E + V D TGRSRGF F+ S+ +V AA +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQ 150
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
G ++E + +D+ + KGF F+T++S V + +K+ + G D+D
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS----LDGADLD 271
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVTPKKAKAR 435
F G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 384
F +G ++ + V + TG+S+ F FI F+ PE + +AAG
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAG 119
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAKAR 435
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 269 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 366
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
G ++E + +D+ + KGF F+T S V + + + G D+D
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS----LNGADLD 316
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAKAR 435
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 366
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
G ++E + +D+ + KGF F+T S V + + + G D+D
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS----LNGADLD 324
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 152 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILE 265
DS+D + +E+P +KLF+ GLS+ T++K LR E
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFE 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 302 FEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 372
HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 323 HFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---K 408
F +G I S V T + G+SRG+ F+ F+ A ++++ + A + K K
Sbjct: 132 FKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Query: 409 VTPKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
K + ++ +++ L + +S+D +R F+E
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.9 bits (69), Expect = 0.40
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN---------NKKVT 414
YG ++ V D TGRS+G+ F+ F + M G++ NK
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 415 PKK---------AKA-----RHGKIFVGGLSSQISDDEIRNFFSE 507
P + A A + IFVGGL + ++DDE+++ F +
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 282
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 51 FSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVTPK 420
F YG + V D T RSRGF F+ + + + ++ + +N ++V+ K
Sbjct: 23 FSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +G++ V D TGRSRGF F+ F
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILEH 268
KLF+GGLSW T D LR H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +G++ V D TGRSRGF F+ F
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILEH 268
KLF+GGLSW T D LR H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 41 FSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRPIGGKDV 650
G +L+V++ DK + + KGF ++TF S E LL+ + + G+ V
Sbjct: 45 GQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F A+ V D TGRSRGF F+ F+
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.9 bits (69), Expect = 0.40
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 26/106 (24%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA------AGEHTINNKKVTPKKAK 429
Y +++ V D NTGRS+G+ F+ F K M + TP+K
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 430 A--RHG------------------KIFVGGLSSQISDDEIRNFFSE 507
+ G IFVGGL S ++D++++ FSE
Sbjct: 283 GYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSE 328
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 277 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAK 429
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 262 GAYGEIESINVKTDPNTGRSRGFAFIVF 345
G Y ++ V D NTGRS+G+ F+ F
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVTPKKAKA 432
+F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K
Sbjct: 175 YFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKE 230
Query: 433 RHGKI 447
+ GK+
Sbjct: 231 K-GKV 234
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAKAR 435
F G + + T+ + RGFAF+ F E +++ + T+ +++T K+A R
Sbjct: 40 FSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 381
F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 581 FTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 445 IFVGGLSSQISDDEIRNFFSE 507
+FVGGL + ++DD ++N FS+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQ 283
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 445 IFVGGLSSQISDDEIRNFFSE 507
+FVGGL + ++DD ++N FS+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQ 283
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F A+GEI + + D RS+G+AFI F + +
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVTPKKAKA 432
+F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K
Sbjct: 278 YFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKE 333
Query: 433 RHGKI 447
+ GK+
Sbjct: 334 K-GKV 337
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F Y V D TGRSRGF F+ F+
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRPIGGKDVDVKRATPK 674
G ++E ++ D+ ++ KGF F+TF S + L++ + + G+ + V A K
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVTPKKAKAR 435
F G++ + D + RS+GF F+ F + + K +M +N + + AKA+
Sbjct: 54 FSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRPIGGKDVD 653
++L G I E + D + KGF FITF+SE LK+ + GK VD
Sbjct: 24 RQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS----LDGKIVD 74
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPKKAKARH 438
F +G+I+ + D T R +GF FI F + + K + + + I + ++ + A++
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV-AKN 85
Query: 439 GKIFVGGLSSQISDD 483
+ G++S ++D
Sbjct: 86 AEEVRAGINSNKAED 100
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F + V D TGRSRGF F+ F+
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F +G + + V D TG SRGF F+ F + E + +
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 76 FAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVTPKKAKA 432
+F +G ++ + + + R F F+ F PE++ V+A G H I + +V K K
Sbjct: 279 YFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKE 334
Query: 433 RHGKI 447
+ GK+
Sbjct: 335 K-GKV 338
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 125 NGNAENGG--GDSQDHNSAEAPGRDDDR 202
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 91 HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 90 HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +YG I+ +++ TD T + +G+AFI +
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 375
F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 442 KIFVGGLSSQISDDEIRNFFSELELS*KWRCPL 540
K++VGG+ Q ++DEIR++F + K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +2
Query: 191 DDDRKLFVGGLSWETTDKELRVILEHTV 274
D ++++G L+W+TT++++R + V
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDCV 286
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Frame = +1
Query: 280 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVTPKKAK--- 429
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 430 --ARHGKIFVGGLSSQISDDEIRNFFSE 507
K+FVG LS ++ + + F E
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRE 199
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F +G + +V D T SRGF F+ F + E + +
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At3g30820.1 68416.m03953 hypothetical protein
Length = 405
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 128 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILEH 268
G A+ G ++ EAP DD K + G +W+ D ++ V L+H
Sbjct: 2 GRAKAAAGTRARMSNTEAPTNDDPNKRPITG-TWDGMDTKMLVDLKH 47
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVTPKKA 426
++G ++ ++ D TG S+G+AF V++ D AA + +K +T ++A
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVTPKKA 426
++G ++ ++ D TG S+G+AF V++ D AA + +K +T ++A
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVTPKKA 426
++G ++ ++ D TG S+G+AF V++ D AA + +K +T ++A
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 435
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
Y ++ V D TGRS+G+ F+ F A ES
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRF-ADES 226
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 80 NNDNFXEDITTDNQLNGNAENGGGDSQDHNS 172
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 125 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILE 265
+G AE+GGG S SA A +DD G + E+R I++
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRDIVD 122
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----TPKK 423
F + + +N+ + T RG F+ E DKV+ ++ +NKK +P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 424 AKARHG----------------KIFVGGLSSQISDDEIRNFFSE 507
K G K+FVG L +S+ E+++ FSE
Sbjct: 88 VKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 366
F GEI+ I + D NT GF F++F + E +
Sbjct: 54 FSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 415 PKKAKARHGKIFVGGLSSQISDDEIRNFFSE 507
P++ + GKIFVG L + I E FF +
Sbjct: 157 PQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 313 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 411
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVTPK 420
HF + G I ++ + P T G A I ++ +KVM + +K+ K
Sbjct: 8 HFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKLVVK 62
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGF 330
HF GEI + V +P+TG +GF
Sbjct: 367 HFSVCGEITRVFVPRNPSTGAIKGF 391
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +G + + + D +G+ RGFAF+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA1)
identical to gi:619753
Length = 312
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 265 LQNDTELLICGLPAQPTNKKFSVVIASWGF 176
L ND EL++ P PT + +V AS GF
Sbjct: 190 LNNDIELVLLTTPTTPTERMKLIVDASEGF 219
>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
KLP2 protein GB:CAA63826 from [Xenopus laevis]
Length = 2008
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 556 KERASVSSHLNLSQS*MICLRLPKDQLVERTSM*SVQHQ 672
K+R S S LN + ++ ++ DQL ER + S+Q++
Sbjct: 1880 KDRESCMSELNKKDTDVLATQISLDQLQERVQLLSMQNE 1918
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 KLFVGGLSWETTDKELRVILE 265
K+FVG L+W TT +LR E
Sbjct: 13 KIFVGNLTWRTTADDLRRYFE 33
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 292 VKTDPNTGRSRGFAFIVFK 348
V D TGRSRGF F+ F+
Sbjct: 183 VMWDQKTGRSRGFGFVSFR 201
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
FG +GE+ + + D RG ++ FKA +K
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
FG +GE+ + + D RG ++ FKA +K
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,123
Number of Sequences: 28952
Number of extensions: 293408
Number of successful extensions: 1455
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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