Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0297
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    29   0.82 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   7.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.7  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 494 SVPCSQRSSVMCFFCFVRS-----VYHGISAIGYHYLHFTSARQPTKVI 363
           SVPC QRS ++ + CF+ S     +      I Y  + + S   P  VI
Sbjct: 96  SVPCVQRSMIILYSCFLCSKHAVLISRDSDCIDYRAMFYQSRNNPEVVI 144


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 501  D*KRPLFTEELRNVFFLFCSLRISRYICHWI-SLLTLY 391
            D ++ LF  E   VFF  C L   RY+  W+   +TL+
Sbjct: 2147 DFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLF 2184


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 446  VRSVYHGISAIGYHYLHFTSARQP 375
            VRS+  G+  +GY YL+    R P
Sbjct: 949  VRSIEDGVDWLGYTYLYVRMLRSP 972


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 265  RDVGIFICVLILFIT*ALTRKIIR*LKSIINFALS 161
            RDV +   V I  +T  L  +I+  L  I+N++LS
Sbjct: 1235 RDVQVSAIVCITVLTNTLAARILPYLADIVNYSLS 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,012
Number of Sequences: 5004
Number of extensions: 51280
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)