Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0297
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)                      29   4.6  
SB_22862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
          Length = 293

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
 Frame = -2

Query: 610 KSTAPLVHPHVVEEELFYHLTFKRTKSIHGR**IIR-RLKASLVHRGAP*CVFFVLFAP- 437
           + TA  +  H     L+YH       S H    +I   L  S +    P     V   P 
Sbjct: 92  RQTATKLFNHHAATILYYHHAATMLYSNHATTMLITVTLLPSFITITLPPSNIIVTLPPS 151

Query: 436 YITVYLPLDIITYTLPRPGNQQKLLPLNITLVIKP 332
           YI V LP   I  TLP       L P NIT+ + P
Sbjct: 152 YIIVTLPPSYIIVTLPPSLITVTLPPSNITVTLPP 186



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 499 LKASLVHRGAP*CVFFVLFAP-YITVYLPLDIITYTLPRPGNQQKLLPLNITLVIKP-YI 326
           L  SL+    P C   +   P  I V LP   IT TLP       LLP  IT+ + P YI
Sbjct: 23  LLPSLITVTLPQCYITITLPPGNIIVTLPPSYITVTLPPSYLTVTLLPSLITVTLPPSYI 82

Query: 325 S 323
           +
Sbjct: 83  T 83


>SB_22862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 395 FTSARQPTKVITVKYNFGN*ALYFIKPKT 309
           F SA QP+  +T+ +NF + A  +I P+T
Sbjct: 64  FPSANQPSAFLTLTHNFHSLAFSYIIPQT 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,953
Number of Sequences: 59808
Number of extensions: 333897
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)