Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0297
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    27   9.4  
CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 539 SFKSQMIKQFLFYYMRVYQWRCTLSLLLFQYIFYSCNCIMHC 664
           S KS  +K     +     WR  L+LLL   + + C CI HC
Sbjct: 248 SEKSGCLKNQWKIFGMCVDWRAMLALLLIGLLLFLCCCICHC 289


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 539 N*IYSWSIINNT*IKSVPCSQRSSVMC 459
           N +YS ++  +T I SVP + R++V+C
Sbjct: 287 NIVYSANVATSTSINSVPTATRATVLC 313


>CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical
           protein C50E10.5 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +2

Query: 395 SVSNDIQWQIYRDIRSEQNKKNTLRSS-SVNKGRF*STYYLLSTMNRFS--SFKSQMIKQ 565
           +V++DIQ+  + D   E  K +++R +  +  G F + +Y+   +  F     +      
Sbjct: 97  NVTSDIQFW-WTDDELEMPKIDSIREAWPLFLGGFLTWHYMFVLITCFYILGLERTFASW 155

Query: 566 FLFYYMRVYQWRCTLSLLLFQY 631
           F+  Y R  +WR   +LL+FQ+
Sbjct: 156 FILDYERTSRWRIFRALLIFQH 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,642,932
Number of Sequences: 27780
Number of extensions: 275946
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)