Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0297
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +3

Query: 147 IKALKLNAKFIIDFNYLIIFLVKAYVINKISTHIK 251
           ++A++L+  F+ D N +   +    ++N    HI+
Sbjct: 528 LEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 157 NALIHLGRIRPNLNLNSSNYTRNN 86
           N  IH      N N N+ NY  NN
Sbjct: 87  NKTIHNNNNYNNNNYNNYNYNNNN 110


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 118 NLNSSNYTRNNLFRDFN 68
           N N++NY  NN   ++N
Sbjct: 332 NYNNNNYNNNNYNNNYN 348


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 533 FSSFKSQMIKQFLFYYMRVYQWRC 604
           +S     M+   L  +  VYQ+RC
Sbjct: 24  YSCVNKSMLNSHLKSHSNVYQYRC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,726
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)