Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0297
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot...    28   5.0  
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu...    27   8.7  

>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
           similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
           precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
           (Proline carboxypeptidase) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 515

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 257 WNFYMCTDFIYNIGLNKKNN*IVKIDYKF-CVKF*CFNTFRAD 132
           WN+  CT+ +  +  N++N+      + +   K  C+NTFR +
Sbjct: 366 WNWQACTEMVMPMSSNQENSMFPGYGFNYSSYKEECWNTFRVN 408


>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
           putative similar to multidrug-resistant protein CjMDR1
           GI:14715462 from [Coptis japonica]
          Length = 1229

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 236 DFIYNIGLNKKNN*IVKIDYKFCVKF 159
           D I +IG N+ N  IV+I  K C+KF
Sbjct: 48  DLIDSIGQNQSNKDIVEIVSKVCLKF 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,196
Number of Sequences: 28952
Number of extensions: 242165
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)