Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0296
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   82   5e-16
SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)                 79   3e-15
SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)                79   5e-15
SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)                 30   2.1  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    28   6.4  
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)                  28   6.4  
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 28   8.5  
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)                 28   8.5  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 28   8.5  

>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = +2

Query: 314 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 493
           + + +L F +L++    P RGS  AAG DL SAYD ++PA+GK LVKTD+ + +P GCYG
Sbjct: 20  RAETVLYFKKLTKLGLPPTRGSSHAAGYDLYSAYDVSIPAQGKALVKTDIAVAIPDGCYG 79

Query: 494 RVAPR 508
           RVAPR
Sbjct: 80  RVAPR 84


>SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)
          Length = 62

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           + LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSIVEV 61


>SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)
          Length = 103

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           + LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSVVEV 61


>SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 514 LALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           +AL N + +G  +I++  R      LFN + TDF    G  +A LIC+ I    + EV
Sbjct: 32  VALCNILVIGTFIINQHLRKKSMYFLFNLALTDFLF--GATVAPLICQVISTSNVDEV 87


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 651 NKLCNSVSFFHTKICVRVIKKNNSNITSIVLINNTGTNINEILQS 517
           NK+ N+    +    + VI  NN+N   IV+I+NT T+  +  Q+
Sbjct: 624 NKIINNYDIIYNNDTI-VIDSNNNNDIIIVIISNTTTSCQQQQQN 667


>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
          Length = 608

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 524 FRAKPVEVLLYHNTQAVVLFVGQFSLILCLEQEQCNHMHSL 402
           F  +  E +LY N +   L +  F+  LCL QE C  ++ L
Sbjct: 351 FALETFESILYKNPKLENLVIEAFARRLCLNQESCPCLNML 391


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 624 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 529
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 294 FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 325


>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 624 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 529
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 97  FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 128


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 624 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 529
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 294 FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,048
Number of Sequences: 59808
Number of extensions: 333623
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)