Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0296
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    86   3e-17
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    86   3e-17

>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/58 (70%), Positives = 47/58 (81%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQ 681
           +GLA K+FIDVGAGVID DYRG V V+LFN +D  F VKKGDRIAQLICEKI + V +
Sbjct: 247 SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYE 304



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKI 663
           +GLA K+FIDVGAGVID DYRG V V+LFN  + DF VKKGDRIAQL+CE+I
Sbjct: 410 SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQI 461



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           +GLA K+FIDVGAGVID DYRG V V+LFN + T F VK GDRIA+LICE+I     +EV
Sbjct: 91  SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIGNGTYEEV 150



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 38/60 (63%), Positives = 45/60 (75%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G YGRVAPR
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFGYYGRVAPR 246



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 34/60 (56%), Positives = 42/60 (70%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G YGRVAPR
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIGYYGRVAPR 409



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/60 (56%), Positives = 40/60 (66%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G YGRVAPR
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIGYYGRVAPR 90


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/58 (70%), Positives = 47/58 (81%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQ 681
           +GLA K+FIDVGAGVID DYRG V V+LFN +D  F VKKGDRIAQLICEKI + V +
Sbjct: 247 SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYE 304



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKI 663
           +GLA K+FIDVGAGVID DYRG V V+LFN  + DF VKKGDRIAQL+CE+I
Sbjct: 410 SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQI 461



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           +GLA K+FIDVGAGVID DYRG V V+LFN + T F VK GDRIA+LICE+I     +EV
Sbjct: 91  SGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIGNGTYEEV 150



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 38/60 (63%), Positives = 45/60 (75%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G YGRVAPR
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFGYYGRVAPR 246



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 34/60 (56%), Positives = 42/60 (70%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G YGRVAPR
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIGYYGRVAPR 409



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/60 (56%), Positives = 40/60 (66%)
 Frame = +2

Query: 329 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 508
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G YGRVAPR
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIGYYGRVAPR 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,796
Number of Sequences: 27780
Number of extensions: 262085
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)