Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0296
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 290 YCIFKMSGKIQPILKFTRLSENAFQPV 370
           YC   +SG+   +L +   S +AF P+
Sbjct: 297 YCKTCISGRAFQVLTWLGYSNSAFNPI 323


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 609 CVRVIKKNNSNITSI 565
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 609 CVRVIKKNNSNITSI 565
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 609 CVRVIKKNNSNITSI 565
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 517 ALKNFIDVGAGVID 558
           ALKN +  GAG ID
Sbjct: 204 ALKNIVACGAGFID 217


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 296 YNNNIELIFKAK 261
           YN NIE  FK+K
Sbjct: 547 YNENIERFFKSK 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,025
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)