Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0296
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...    89   3e-18
At3g23160.1 68416.m02919 expressed protein contains Pfam domain ...    28   5.2  

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 44/60 (73%), Positives = 48/60 (80%)
 Frame = +1

Query: 508 TGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 687
           +GLA K+ IDVGAGVID DYRG VGV+LFNHSD DF VK GDRIAQLI EKI  P + EV
Sbjct: 89  SGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEV 148



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 35/62 (56%), Positives = 40/62 (64%)
 Frame = +2

Query: 323 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVA 502
           P  K  +LSE A  P RGS  +AG DL SA D  VPARGK L+ TDL I +P G Y R+A
Sbjct: 27  PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARIA 86

Query: 503 PR 508
           PR
Sbjct: 87  PR 88


>At3g23160.1 68416.m02919 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668);
           expression supported by MPSS
          Length = 522

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = -3

Query: 343 SSKL*NRLDFTRHFEYTITILN*SLKLRYANIKNEITRM*VYDNLKLN**ASANI*NQNK 164
           S+K   +   T+H   + TI   +L L YAN+   + ++  Y +L +   A  ++     
Sbjct: 334 SNKFGFKSRLTQHASAS-TIGGSALSLHYANVVIVVEKLLKYPHL-IGEEARDDLYQMLP 391

Query: 163 NGSKQCLKGK*KSYCKLITLYDIP 92
              K  LK   +SY K I++YD P
Sbjct: 392 TSLKTTLKASLRSYLKNISIYDAP 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,406
Number of Sequences: 28952
Number of extensions: 227558
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)