Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0295
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    57   6e-10
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.70 
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   8.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.7  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.7  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 56.8 bits (131), Expect = 6e-10
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
 Frame = +1

Query: 232 RRGRKRHEDFPEFLTMMA--RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 405
           +RG K+ + F EFL + +  +K K+    E+  E  +++DK+ +G +  AEL H +T LG
Sbjct: 57  KRGEKKIK-FEEFLPIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALG 115

Query: 406 EKLTDEEVDEMIREA--DIDGDGQVNYEEFVTMM 501
           E+L D E+D ++++     D DG + Y  F+  M
Sbjct: 116 ERLDDVELDNVMKDCMDPEDDDGNIPYAPFLKKM 149



 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 65  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT 199
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT 45



 Score = 35.1 bits (77), Expect = 0.002
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +2

Query: 98  EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL----QDMINEVDADGN 247
           +F E   L+DK+ DGT+   EL   + +LG+   + EL    +D ++  D DGN
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGN 139



 Score = 31.9 bits (69), Expect = 0.019
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +1

Query: 280 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 459
           MA  +KD + E+  +  F V+D +G+G + A +L + +  L    T E + +M       
Sbjct: 1   MANDLKDVEIEKA-QFVFSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM-GGTQKR 58

Query: 460 GDGQVNYEEFVTMMT 504
           G+ ++ +EEF+ + +
Sbjct: 59  GEKKIKFEEFLPIFS 73


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 22/100 (22%), Positives = 43/100 (43%)
 Frame = +1

Query: 175 EVARTEPHRSRTSRHDQ*SRRGRKRHEDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 354
           EVA T  +  R        R    + E   E+L  +  ++K  + E+E    ++ +DK  
Sbjct: 161 EVAGTRVYDERKEESMNLLRESEGKLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDK-- 218

Query: 355 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 474
               +   L +V+     K T ++++E+  +    GD Q+
Sbjct: 219 ----ARRTLEYVIYETELKETRKQLEELDGQRKSSGDKQL 254



 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 343  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 471
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 295 SSCAPSLSRTRESLRAVSVRV 233
           SS  PSLS   ESL+ ++++V
Sbjct: 129 SSAEPSLSEMNESLKLLAMQV 149


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 523 SVCVKAENLNIHFVS*HTILASYW 594
           S+CV    LNIHF S  T   + W
Sbjct: 316 SICVTVIVLNIHFRSPQTHTMAPW 339


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 90  RSPSLRRHSHCSTKTAMAPSRPKS 161
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,127
Number of Sequences: 2352
Number of extensions: 10032
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)