Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0295
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 523 SVCVKAENLNIHFVS*HTILASYW 594
           S+CV    LN+HF S  T + + W
Sbjct: 317 SICVTVVVLNVHFRSPQTHVMAPW 340


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 429 DLLVSEFLS--EVGHDVAQLGRGDEAVAVLVE 340
           DL  S+ L   E+ HDVA  G+G E V++ V+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKG-ELVSLTVQ 193


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 523 SVCVKAENLNIHFVS*HTILASYW 594
           S+CV    LN+HF S  T   + W
Sbjct: 321 SICVTVVVLNVHFRSPQTHKMAPW 344


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 523 SVCVKAENLNIHFVS*HTILASYW 594
           S+CV    LN+HF S  T   + W
Sbjct: 321 SICVTVVVLNVHFRSPQTHKMAPW 344


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 319  FLPRYPCPSSCAP 281
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 301 CPSSCAPSLSRTRESLRAVSVR 236
           CP  C P L +++ S + V+ R
Sbjct: 347 CPLHCKPELGQSQSSPKFVARR 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,470
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)