Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0293
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    64   2e-11
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    48   1e-06
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    41   2e-04
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   9.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   9.1  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.1  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   9.1  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
 Frame = +1

Query: 298 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 477
           + +D+D A ++G+ V N+P AN+ S  EL    ++ LAR V   S  L  G W++     
Sbjct: 131 NQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGC 190

Query: 478 SELAGKTLAILALAXXGREVATRMYAFGMNIIGFD-----PFVSADQCAS 612
            E+ GKTL I+     G +++    A G++++ +D     P  SA Q +S
Sbjct: 191 WEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDILPIMPLGSAKQLSS 240


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 24/92 (26%), Positives = 41/92 (44%)
 Frame = +1

Query: 298 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 477
           +N+DVD A + GV V N P         +   L +   R    A  +L+ G+W + L   
Sbjct: 95  NNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQNLSLT 154

Query: 478 SELAGKTLAILALAXXGREVATRMYAFGMNII 573
            +  GK + I+ +   G+  A ++   G  I+
Sbjct: 155 DDPYGKRVGIIGMGAIGKSFAQKILPLGCEIV 186


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 40/92 (43%)
 Frame = +1

Query: 298 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 477
           + +DV +   +G+ V + P A   +  ++   LML   R        L    W+      
Sbjct: 92  ETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNANCKPS 151

Query: 478 SELAGKTLAILALAXXGREVATRMYAFGMNII 573
            +  GKTL IL L   G+ +A R  AF M I+
Sbjct: 152 HDPEGKTLGILGLGGIGKTMAKRARAFDMKIV 183


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 473 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 348
           + R R HL  + A E  T WR    +  +  +  LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 416 WRARTNINVQVSSHALSALAPGALITPTPFL 324
           W+  TN  +QV ++ L  L P   +   PFL
Sbjct: 96  WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 492 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRAGQLA 376
           A + +   +S +PP+ SL R+G    V++QN   RA  LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 385 TCTLMLVLARHVVPASTALKAGRWDRALYTGSELAGKTLAI-LALAXXGREVATRMYAFG 561
           T +++L + +++ PA       +W  +  T S  A   LA+ +ALA     ++   YA G
Sbjct: 123 TLSIVLTILKYLAPAYIR----QWSISCLTTSTAACLLLALQMALA----HISANSYAVG 174

Query: 562 MNIIG 576
           MN+ G
Sbjct: 175 MNLTG 179


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 127 QRLRNRHHHQGQDLQGRTSYGDTQPRRSG 213
           QR       +G+  +GR +YG T P R G
Sbjct: 86  QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,423
Number of Sequences: 5004
Number of extensions: 39244
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)