Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0293
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 57 1e-08
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 52 3e-07
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 40 3e-05
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 32 0.45
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 5.5
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 7.3
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 7.3
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +1
Query: 469 YTGSELAGKTLAILALAXXGREVATRMYAFGMNIIGFDPFVSADQCASS 615
+ G+EL GKTLAI+ L GREVA RM ++G+ IG+DP VS A S
Sbjct: 1 FMGNELFGKTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAES 49
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +1
Query: 298 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA-STALKAGRWDRALYT 474
D ID+ +A K+G+ V N PG ++ L+L ARH+V + K G +++
Sbjct: 80 DRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIVTGDANTRKPGFTKESIFN 139
Query: 475 --GSELAGKTLAILALAXXGREVATRMYAFGMNII 573
G+ + G TL I+ L G VA R F M I+
Sbjct: 140 CFGTRVTGSTLGIVGLGAVGSAVAMRAKGFKMRIL 174
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = +1
Query: 298 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL-KAGRWDRAL-- 468
DNID+++A ++G+ V N PG + A + L++ AR+V+ A + K G ++
Sbjct: 84 DNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQADAMMRKPGFKIPSIIN 142
Query: 469 YTGSELAGKTLAILALAXXGREVATRMYAFGMNIIGFD 582
+ G+ ++G TL I+ L G VA R F M I+ ++
Sbjct: 143 WHGTRVSGATLGIIGLGNIGLAVAKRAKGFDMRILYYN 180
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 40.3 bits (90), Expect(2) = 3e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 68 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 196
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
Score = 25.0 bits (52), Expect(2) = 3e-05
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +2
Query: 200 HDALVVRSATQVTKEVL 250
+D L+VRSAT+V+++V+
Sbjct: 77 YDGLIVRSATKVSEDVI 93
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 112 VCRTPQRLRNRHHHQGQDLQGRTSYGDTQPR 204
+CR+ + RHHH L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -3
Query: 518 AKARMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALIT 339
A + R+ P RA L A +A AGT +R++ +V ++S + + +T
Sbjct: 554 AGSAQGRITTKKKTPPRRANL-LEALTAAAAGTPAASRSSSSVSLASPGMRSSLGSLQLT 612
Query: 338 PTPFLPAESTS 306
P F P S S
Sbjct: 613 PPSFTPRSSIS 623
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 121 TPQRLRNRHHHQGQDLQG 174
TPQ+L HH++G D+QG
Sbjct: 254 TPQKLPFHHHNKGYDIQG 271
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 313 DSAGKKGVGVINAPGANALSACELTCTLML 402
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 386 VSSHALSALAPGALITPTPFLPAESTSML 300
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 113 CAELLNAYGIATTTKAKISKEELLMEIPNHDALVV 217
C L N Y A+T++ K SKE+++ ++ +VV
Sbjct: 3040 CQTLNNTYSPASTSRVKASKEQIISANSSYAEIVV 3074
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 478 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTCRSARTRS 368
C TEP P Q S+ K PE +++ S T S
Sbjct: 168 CSTTEPAPQDQVSSSCKTTETSRPETSTSATSEETNS 204
>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 127 QRLRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSS 234
+R ++R DL +GD QPRRS F NSS
Sbjct: 87 RRTKSRSSSLKDDLSPFLVFGDWQPRRSERIFINSS 122
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 375 VRADLHVDVGSGSPR--GPSFHCAEGWQVGPGSVH-WQRARWQDP 500
VR ++ G G+ GPS AEG ++GP +VH A W++P
Sbjct: 328 VRGPFNLSHGPGNRNRYGPSLVHAEGLRLGPKTVHRILHAVWKNP 372
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 115 CRTPQRLRNRHHHQGQDLQGRTSYGDTQPRRSGCA 219
C P+ +R+ G+ Y ++ PR GCA
Sbjct: 5 CYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCA 39
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 478 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTC 389
C+ T P P+C P++Q+ L PR P + C
Sbjct: 819 CEKTSP-PSCIPASQYCLAPRECPPHQTIC 847
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,249
Number of Sequences: 59808
Number of extensions: 363710
Number of successful extensions: 1133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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