Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0293
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.81 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.81 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 636  PAPSWCNGTGALISRHERVESDDVHAEGVHPSGHLAAXXCQGQDG 502
            P   W  G G      E++ +D      + PSG L     Q QDG
Sbjct: 1341 PTREWYKGQG------EQIRTDSTRNIQILPSGELMLSNLQSQDG 1379


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 636  PAPSWCNGTGALISRHERVESDDVHAEGVHPSGHLAAXXCQGQDG 502
            P   W  G G      E++ +D      + PSG L     Q QDG
Sbjct: 1337 PTREWYKGQG------EQIRTDSTRNIQILPSGELMLSNLQSQDG 1375


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 404 TNINVQVSSHALSALAPGALITPTPFLPAESTSM 303
           TN+   +++   S ++      P   LPA STS+
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSI 866


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 295 HQLQHDRPPSASRLVQHLFGHLS 227
           H   HD PP  S  +  LF H S
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFS 155


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 295 HQLQHDRPPSASRLVQHLFGHLS 227
           H   HD PP  S  +  LF H S
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFS 123


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 401 WFWLATWSQLPL 436
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 401 WFWLATWSQLPL 436
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,078
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)