Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0292
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.7  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 395 APLAAPPDRTEAAGAP 442
           +P AAPP  T ++G+P
Sbjct: 29  SPAAAPPPATTSSGSP 44


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 550 RRSIHNDMERQRRIGLKNLFDELK 621
           RRS    ME++RR  + N  +ELK
Sbjct: 35  RRSNKPIMEKRRRARINNSLNELK 58


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 7   QSLLRRDISPSRPDTPPSLDGD-EPPQFRHA 96
           Q  +R D   +       L G  EPPQ RHA
Sbjct: 389 QCFIRNDQESAEATAELKLGGRFEPPQIRHA 419


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  SRPDTPPSLDGDEPPQ 84
           +RP + PS DG +P Q
Sbjct: 413 ARPPSTPSADGSKPVQ 428


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 534 VSGDRASFHTQRYGTTETYRP 596
           + GDRA+F T      E +RP
Sbjct: 146 LEGDRANFITLLSDLKEAFRP 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,881
Number of Sequences: 336
Number of extensions: 1847
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)