Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0292
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0388 + 3432177-3433154                                           29   4.0  
05_01_0210 + 1583176-1584177                                           29   4.0  
01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443     28   5.3  
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    28   7.0  
01_06_1568 - 38299113-38299790,38300165-38300254,38300368-383004...    28   7.0  
05_04_0179 + 18784011-18784240,18785035-18785119,18785905-187861...    27   9.3  
03_05_0438 + 24306821-24307174                                         27   9.3  
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611...    27   9.3  

>08_01_0388 + 3432177-3433154
          Length = 325

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
 Frame = +1

Query: 19  RRDISPSRPDTPPSLDGDE--PPQFRHAVDVAGTALRLLRDSAAVAAD 156
           RR  S S P  PP    D   PP  RHA   A  A   + D      D
Sbjct: 122 RRQSSSSNPTPPPPKPSDPIAPPPPRHAAAAAAAAATAVSDGGEAVED 169


>05_01_0210 + 1583176-1584177
          Length = 333

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 34  PSRPDTPPSLDGDEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTL 171
           P  P  PPSL+ +  PQ+ HA   A  A+R   D + ++   +  L
Sbjct: 41  PLLPADPPSLERERLPQWSHAETAAFLAIRADLDHSFLSTKRNKAL 86


>01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443
          Length = 503

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 61  LDGDEPPQFRHAVDVAGTALRLLRDSAAVA 150
           +DGD  PQ  H    AG +LR +RD+ A A
Sbjct: 85  IDGDLFPQGPHISAAAGASLRSIRDAVANA 114


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 70  DEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTLARQHRDYLGVQTPSDSGESEEEI 240
           +E  +++   +VA +  +     AAVA + +    ++  D L  +  S   E EEEI
Sbjct: 638 EEASEWKRKYEVAVSEAKTALQRAAVAQERTNKKVQEREDALRAELASQLSEKEEEI 694


>01_06_1568 -
           38299113-38299790,38300165-38300254,38300368-38300484,
           38300600-38300962
          Length = 415

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 43  PDTPPSLDGDEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTLARQHRD 189
           PD+PP    +   +  H  D  G  +  L   A V A H   + R  RD
Sbjct: 202 PDSPPLGREEHEEEADHEADHEGHRVHHLPGHAGVVAQHDVVVRRGERD 250


>05_04_0179 +
           18784011-18784240,18785035-18785119,18785905-18786102,
           18786347-18786527,18787026-18787315,18787583-18787771,
           18788316-18788792
          Length = 549

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 209 RLTPVNQRRK--LMWYLWNNTAAICADDYDDTQQYATSGNVGS 331
           R+ P++QR++  ++W +     A+C  D D T  +  + ++G+
Sbjct: 410 RVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVTHVVALDLGT 452


>03_05_0438 + 24306821-24307174
          Length = 117

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 34  PSRPDTPPSLDGDEPPQFRHAVD 102
           P R D PPS D  EPP  R +++
Sbjct: 88  PHRTDAPPSADFIEPPPLRASLE 110


>01_06_0282 -
           28160321-28160417,28160585-28160653,28161090-28161145,
           28161650-28161741,28162314-28162398,28162512-28162628,
           28162766-28162798,28163109-28163199,28163908-28163967,
           28164115-28164180,28165238-28165430,28165665-28165821
          Length = 371

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = -2

Query: 256 PEIPHQFPPLIHRSQTVSALRGNPGVVSPKCTNDRRLRPLNL 131
           P +P    P+ HR + ++++  +  V+    +ND+R++ + +
Sbjct: 41  PSLPQHSAPIHHRRRVINSIDASGEVMEYGSSNDQRMQDMEI 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,454
Number of Sequences: 37544
Number of extensions: 254536
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)