Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0292
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)                   32   0.44 
SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)                    31   0.58 
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)           30   1.3  
SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_22384| Best HMM Match : HLH (HMM E-Value=2.7e-12)                   29   3.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   3.1  
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_35159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_7690| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_17532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_44188| Best HMM Match : Dynein_heavy (HMM E-Value=0.0091)           27   9.5  
SB_43453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               27   9.5  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)
          Length = 470

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 553 RSIHNDMERQRRIGLKNLFDELK 621
           RS+HND+E+QRR  +K  FD L+
Sbjct: 385 RSLHNDIEKQRRDHMKLRFDNLR 407


>SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)
          Length = 362

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 508 YTDTDSEAESPEIERRSIHNDMERQRRIGLKNLFDELKMQ 627
           +  + SE E     +R++HN +ER+RR  LK  F +L+ +
Sbjct: 266 HVSSGSEEEHDCESKRAVHNVLERKRRNDLKTSFHQLRAE 305


>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
          Length = 432

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +2

Query: 26  TYHRRDLTHHPR*TAMNHLSSVTRSTSLEQLFVCSEIQ--RP*PPIIRTLWRDNTGI--T 193
           T+H+    HHP    +   +S   STSLE+  + +  Q  +  PP    +W+D +    T
Sbjct: 224 TFHQSGKIHHPHFPPVWKDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALST 283

Query: 194 SECRHRLTPVNQRRKL 241
           S  R+ +  V+Q  K+
Sbjct: 284 SLARYIIRTVHQSGKI 299



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 26  TYHRRDLTHHPR*TAMNHLSSVTRSTSLEQLFVCSEIQ--RP*PPIIRTLWRDNTG--IT 193
           T+H+    HHP    +   +S   STSLE+  + +  Q  +  PP    +W+D +    T
Sbjct: 54  TFHQSGKIHHPHFPPVWQDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALFT 113

Query: 194 SECRHRLTPVNQRRKL 241
           S  R+ +   +Q  K+
Sbjct: 114 SLERYIIRTFHQSGKI 129


>SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 511 TDTDSE-AESPEIERRSIHNDMERQRRIGLKNLFDELK 621
           T+T++E +E  EI R + HN +ERQRR  LK  F  L+
Sbjct: 223 TETENEDSEDSEISRAT-HNVLERQRREDLKCRFQLLR 259


>SB_22384| Best HMM Match : HLH (HMM E-Value=2.7e-12)
          Length = 323

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 514 DTDSEAESPEIERRSIHNDMERQRRIGLKNLFDELK 621
           D  + ++S     R  HND+ER+RR  L++ F+ L+
Sbjct: 225 DEQTSSDSEPDNFRISHNDLERKRRNELRSRFNSLR 260


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 514  DTDSEAESPEIERRSIHNDMERQRRIGLKNLFDELKMQ 627
            +T+S     E+++RS+  D+ER R +  +N  +++ +Q
Sbjct: 1575 NTESRLTKVELKKRSVEGDIERLRMLNSENEAEKIALQ 1612


>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 293 DTQQYATSGNVGSCCFNARSASGPATVRIRDVSHAPLAAPPDRTEAAGAP 442
           +T+   TS  +  CC + R A+ PA       +HA   AP   T    +P
Sbjct: 281 NTRFRITSWKIACCCLHNRIANSPAGNEASRTAHASRPAPTRETARETSP 330


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 31  SPSRPDTPPSLDGDEPPQFRHAVDVAGT 114
           +P RP TPPS+    PPQ  +  D  GT
Sbjct: 755 APPRPSTPPSV-SSAPPQTTNFCDTPGT 781


>SB_35159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 70  DEPPQFRHAVDVAGTALRLLRDSAAVAADHS-YTLARQHRDYLGVQTPSDSGESEEEIDV 246
           DE P F+ ++ ++         ++     HS Y+     R      T SDSG SE+E D+
Sbjct: 174 DECPDFKASIPISYVVASPALTASPGGISHSAYSPRGDGRSITSEDTRSDSGRSEDEDDM 233

Query: 247 V 249
           +
Sbjct: 234 M 234


>SB_7690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 514 DTDSEAESPEIERRSIHNDMERQRRIGLKNLFDELK 621
           D+D E+E+     R+ HN +ER+RR  LK  F +L+
Sbjct: 336 DSD-ESENDSEYTRATHNVLERKRRNDLKLKFQKLR 370


>SB_17532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/66 (21%), Positives = 24/66 (36%)
 Frame = +2

Query: 188 ITSECRHRLTPVNQRRKLMWYLWNNTAAICADDYDDTQQYATSGNVGSCCFNARSASGPA 367
           +T +C+H +   N +    W++         D  +D Q      NV + C N     G  
Sbjct: 3   LTGDCKHNVHLWNPQEGGSWHVDQRPFNAHTDSVEDVQWSPNENNVRTTCHNTYFKKGYQ 62

Query: 368 TVRIRD 385
              + D
Sbjct: 63  RETVND 68


>SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 26  TYHRRDLTHHPR*TAMNHLSSVTRSTSLEQLFVCSEIQ--RP*PPIIRTLWRDNTGITSE 199
           T+H+    HHP    +   +S   STSLE+  + +  Q  +  PP    +W+D +   S 
Sbjct: 9   TFHQSGKIHHPHFPPVWKDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALST 68

Query: 200 CRHR 211
              R
Sbjct: 69  SLER 72


>SB_44188| Best HMM Match : Dynein_heavy (HMM E-Value=0.0091)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 439 GTSRFRAIGRGGERGVRDVADSNGRW 362
           G  R+RA+  GG  GVRD     G W
Sbjct: 53  GIPRYRAVAGGGVLGVRDPNKGVGYW 78


>SB_43453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 26  TYHRRDLTHHPR*TAMNHLSSVTRSTSLEQLFVCSEIQ--RP*PPIIRTLWRDNTGITSE 199
           T+H+    HHP    +   +S   STSLE+  + +  Q  +  PP    +W+D +   S 
Sbjct: 20  TFHQSGKIHHPHFPPVWKDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALST 79

Query: 200 CRHR 211
              R
Sbjct: 80  SLER 83


>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 917

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   PQQSLLRRDISPSRPDTPPSLDGDEPPQFRHAV 99
           PQQ+ L      + P  PP + G  PPQ  + V
Sbjct: 337 PQQAYLPPGYGQTDPGLPPLMTGPAPPQLMYPV 369


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 26   TYHRRDLTHHPR*TAMNHLSSVTRSTSLEQLFVCSEIQ--RP*PPIIRTLWRDNTGITSE 199
            T+H+    HHP    +   +S   STSLE+  + +  Q  +  PP    +W+D +   S 
Sbjct: 1068 TFHQSGKIHHPHFPPVWKDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALST 1127

Query: 200  CRHR 211
               R
Sbjct: 1128 SLER 1131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,224
Number of Sequences: 59808
Number of extensions: 273189
Number of successful extensions: 871
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)