Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0292
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70206-4|CAA94125.1|  235|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   6.3  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   6.3  
Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    27   8.4  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    27   8.4  

>Z70206-4|CAA94125.1|  235|Caenorhabditis elegans Hypothetical
           protein F46G10.6 protein.
          Length = 235

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 523 SEAESPEIERRSIHNDMERQRRIGLKNLFDELK 621
           S + S + +RR+ HN++ER+RR  +K+ F  LK
Sbjct: 39  SASPSMDDDRRAHHNELERRRRDHIKDHFTILK 71


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 55   PSLDGDEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTLARQHRD 189
            PS+DGDEPP  R ++      L L  D   +A D    L  +H +
Sbjct: 1261 PSVDGDEPPAVRRSL------LELPHDERQIAEDSMRDLNDRHSE 1299


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 55   PSLDGDEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTLARQHRD 189
            PS+DGDEPP  R ++      L L  D   +A D    L  +H +
Sbjct: 1382 PSVDGDEPPAVRRSL------LELPHDERQIAEDSMRDLNDRHSE 1420


>Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical
           protein K08D8.3 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 236 KLMWYLWNNTAAICADDYDDTQQYATSGNVGSCCFNARSASGPATVRIRDVSHAPL 403
           K+ W  + N A        + + +A + N     FNA +  G     +R+ SH PL
Sbjct: 128 KVTWSKYPNVAHDTVQLLKNDKPFAMAPNTHLTTFNAETTVGLVAFTLRNQSHYPL 183


>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 553 RSIHNDMERQRRIGLKNLFDELKM 624
           R+ HN++E+ RR  L+   + LKM
Sbjct: 97  RTAHNELEKTRRANLRGCLETLKM 120


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 553 RSIHNDMERQRRIGLKNLFDELKM 624
           R+ HN++E+ RR  L+   + LKM
Sbjct: 97  RTAHNELEKTRRANLRGCLETLKM 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,341,417
Number of Sequences: 27780
Number of extensions: 191460
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)