Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0292
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58880.1 68418.m07377 hypothetical protein                          32   0.36 
At4g13740.1 68417.m02133 expressed protein                             29   1.9  
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin...    28   4.4  
At4g25410.1 68417.m03655 basix helix-loop-helix (bHLH) family pr...    28   5.9  
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea...    28   5.9  
At2g42560.1 68415.m05267 late embryogenesis abundant domain-cont...    28   5.9  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    28   5.9  

>At5g58880.1 68418.m07377 hypothetical protein
          Length = 1088

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 290  DDTQQYATSGNVGSCCFNARSASGPATVRIRDVSHAPLAAPPDR 421
            + TQ+Y   GNV   C NA +AS    ++++D +++PL    D+
Sbjct: 876  ESTQEYKNRGNV-EACGNAENASDVLLLQVQDGNNSPLDESTDQ 918


>At4g13740.1 68417.m02133 expressed protein 
          Length = 605

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +1

Query: 130 RDSAAVAADHSYTLARQHRDYLGVQTPSDSGESEEEIDVVSLEQXXXXXXXXXXXXPTIC 309
           RD +   ++ + + A  H+DY G     DS  S+E  +V  +              P++ 
Sbjct: 411 RDKSLTVSERADSFALHHKDYCGKHIRFDSSSSDENDNVYEVRNLNSSDHINSCPYPSVA 470

Query: 310 YVRKR 324
              KR
Sbjct: 471 EEMKR 475


>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
           D3.1 protein [Nicotiana tabacum] GI:4160300; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain
          Length = 367

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +2

Query: 110 EQLFVCSEIQRP*PPIIRTLWRDNTGITSECRHRLTPVNQRRKLMWYLWNNTAAICADDY 289
           E+L  C E++      I TL + N    +EC   L   N  +K M  L +  +     D+
Sbjct: 256 EELKPCDEVEYQ--SQITTLLKVNQEKVNECYELLLEHNPSKKRMMNLVDQDSPSGVLDF 313

Query: 290 DDTQQYATSGNVGSCCFNARSASGP 364
           DD+    +S NV +    + S+S P
Sbjct: 314 DDSSN--SSWNVSTTASVSSSSSSP 336


>At4g25410.1 68417.m03655 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 221

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 517 TDSEAESPEIERRSIHNDMERQRRIGLKNLFDELK 621
           T  E +  + +++ +H D+ERQRR  +  LF  L+
Sbjct: 32  TAHETDDNKKKKKLLHRDIERQRRQEMATLFATLR 66


>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, muscle
           (Swiss-Prot:P05661) [Drosophila melanogaster]
          Length = 468

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 118 ELFQRRRPRDGTEVVHRRLTRVVCQ 44
           EL   R+ R  +E +HR+LTR +C+
Sbjct: 233 ELDDERKVRKESETLHRKLTRELCE 257


>At2g42560.1 68415.m05267 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to LEA protein [Glycine max]
           GI:1389897; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 635

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 94  AVDVAGTALRLLRDSAAVAADH--SYTLARQHRDYLGVQTPSDSGESEEEIDVVS 252
           AV+V   A+ L ++ AAVAAD    YT  ++       Q     GE E++   VS
Sbjct: 447 AVEVGSKAVDLTKEKAAVAADTVVGYTARKKEEAQHRDQEMHQGGEEEKQPGFVS 501


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 50  HHPR*TAMNHLSSVTRSTSLEQLFVCSEIQR 142
           HHP+   +    +VT S+ L+ LF+C   +R
Sbjct: 22  HHPKYCPIPQTQTVTSSSDLQPLFLCPRSRR 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,036
Number of Sequences: 28952
Number of extensions: 180391
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)