Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0291
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    29   0.78 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   1.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    27   3.2  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    26   4.2  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   4.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.3  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 369 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRILCP 524
           N+H   G   ++++ +IVS+ K   T  + +      S + +SG ST I  P
Sbjct: 77  NNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 249 PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQ 428
           PS+  + S  PE  +P     L+ + +    T+N IP LT   ++YG +    D S V +
Sbjct: 184 PSSSSSFSVPPESLNP----TLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRADRSSVRR 239

Query: 429 DKVAFTNDNG 458
            +      NG
Sbjct: 240 SQSFKNRRNG 249


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 213 NHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGY 392
           NH   +P +   P+    P     + DP D+ +L    S +   E LI  L N  KS  +
Sbjct: 151 NHFAYEPGTRENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSF 210


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 286 IATLKITRLLMNESLRISILKI*YLT*QIVINPMGTLV*I-RTSLLLVKTKWRLQMIMGI 462
           ++ L     + N  LR  + +I Y   Q  +     L+ + RTS   V T+W L  +M  
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675

Query: 463 YIKVKNLVPKTQ 498
           YI++++    TQ
Sbjct: 676 YIEIESTGQSTQ 687


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 417 IVSQDKVAFTNDNGNLYQ--SKESRSENSGTSTRILCPKLFMYRQTAYKIINCIKWQKQR 590
           +  + KVA  N N N  +  SK++   +  T   +   K+F  +Q +  I + + W+++R
Sbjct: 75  VSEEKKVAIPNKNSNQQKKASKQNPQNSPETDANLQEKKIFEEKQVS--IFSHLDWRRRR 132

Query: 591 RLHN 602
              N
Sbjct: 133 TTEN 136


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 427 KTKWRLQMIMGIYIKVKNLV--PKTQEPQPGY 516
           K +W   ++ G++   + ++  P+T+E QPGY
Sbjct: 93  KLEWTRVLLRGVFCHDQEMLVGPRTKEGQPGY 124


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 474 KESRSENSGTSTRILCPKLFMYR 542
           K S S +  T  + LCPKLF +R
Sbjct: 442 KRSNSIDFPTPPKALCPKLFCFR 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,017
Number of Sequences: 5004
Number of extensions: 55596
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)