Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0291
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562...    30   1.9  
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   2.5  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    29   4.3  

>04_04_0802 -
           28155281-28155725,28155750-28156081,28156164-28156266,
           28156347-28156528,28156617-28156800,28156872-28156960,
           28157634-28157710,28157837-28157927,28158230-28158430
          Length = 567

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 408 DESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRILCPKLFMYRQTAYK 557
           D  +  +  V  TN+NGN+ +    R  + GTS  IL  KL   R   +K
Sbjct: 394 DYIVCDKSDVFVTNNNGNMARMLAGRRNSLGTSGHILKRKLNFRRYFGHK 443


>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 288 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 452
           ++PQ   AL+E    D  +EN +  L++S  +   T  D +E + + D     N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 189 QHSRSWRPNHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKH 341
           +HS+   P H + +  S+       +   R  HRD   Y   +E +S  +H
Sbjct: 762 RHSKDLEPRHHRHRDSSSEDEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRH 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,006
Number of Sequences: 37544
Number of extensions: 308016
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)