Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0291
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  30   1.5  
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)                   29   2.5  
SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)                       29   4.4  
SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)          28   5.9  
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 309 ALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 488
           ++N+  +     +N I +  NS      +  D D SI   D   + NDN ++Y +  S  
Sbjct: 290 SINDNDNSINDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIYDNDNSIY 349

Query: 489 ENSGT 503
           +N  +
Sbjct: 350 DNDNS 354


>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
          Length = 374

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +3

Query: 210 PNHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 389
           P    TK  ST  P       Q   H      T   ++++  KHTE  +    N+  S+ 
Sbjct: 64  PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 123

Query: 390 YTGIDKDESIVSQDKVAFTNDNG 458
            T   + + ++ ++++ F   NG
Sbjct: 124 LTECKRFKELLYEERLEFLKSNG 146


>SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 312 LNERKSQDKHTENLIPNLT-NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 482
           ++E + +D+ T N  P L  N  KSY    I   E  ++ ++ +  +  G+L   KES
Sbjct: 41  VDENEPKDEETANQTPTLKDNDEKSYYKVDIPSSEQRITVEERSDDSTRGHLGSPKES 98


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +3

Query: 378  KSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTR--ILCPKLFMYRQTA 551
            K   YT +     ++ +    F   NG+    K    EN     R  I C K F+  +  
Sbjct: 3795 KKLSYTRLFSIMEVIQEAAKVFVCKNGSTVNQKTKGFENPTPCCREDIKCVK-FLEPECV 3853

Query: 552  YKIINCIKWQKQR 590
             +   CIKWQK +
Sbjct: 3854 VENEACIKWQKNK 3866


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 HSRSWRPNHRKTKP*STS*PSNVENPSQRPEHRD--PQDYTALNERKS-QDKHTENLIPN 362
           H R  R  H +    S S   N E PS R + RD  P +   L   +S +D  T N   N
Sbjct: 80  HRRESRRVHVRNSRCSDSFRGNDEKPSARSDRRDRKPDNQRGLKRSRSRKDDTTANAKRN 139

Query: 363 LTNSHKSYGYTG 398
            +   + + Y G
Sbjct: 140 RSQYQRLHSYRG 151


>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 300 DYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE 479
           D   L+ + SQ +  +       N H S+   G+D  E++ S+D+ + T         KE
Sbjct: 715 DNCELSSKSSQPESEQVRESKTHNEHVSHAPDGLDTQETVGSKDEDSITERKKT--DQKE 772

Query: 480 SRSENS 497
             SE+S
Sbjct: 773 GNSESS 778


>SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTN 371
           P+  ++ +Q P HR PQ+Y+    ++S+ + +    P L N
Sbjct: 81  PTLGDSRNQHPNHRIPQNYSLRTIKRSEIRGSTGSPPTLAN 121


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 258  VENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK 434
            +E    + E    +D T   ER+ +D   EN+  N+ NS  S   + ++    I  +DK
Sbjct: 976  LERRKHQEELETLKDKTLKVERELRDSQQENIKMNIENSKLSRKVSSLESSVEIFEKDK 1034


>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
          Length = 1607

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/83 (22%), Positives = 33/83 (39%)
 Frame = +3

Query: 210 PNHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 389
           P    TK  ST  P       Q   H      T   ++++  KHTE  +    N+  S+ 
Sbjct: 535 PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 594

Query: 390 YTGIDKDESIVSQDKVAFTNDNG 458
            T   + + +  ++++ F   NG
Sbjct: 595 LTECKRFKELPYEERLEFLKSNG 617


>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = +3

Query: 300 DYTALNERKSQ----DKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLY 467
           DY+  NE + +    D H   +I    N+ KS        DE+  S  KV F ++N ++ 
Sbjct: 61  DYSISNEVEMRLVIHDSHAGRIIGRKGNNLKSV------MDETGASSIKVRFFSNNVDVV 114

Query: 468 QSKESRSENSGTSTRILCPKLFMYRQTAYKIINCIK--WQKQRRL 596
            S  +       + RIL  K  +  +T YK+    K  W+K +R+
Sbjct: 115 CSGHNLPTTLPRAVRILINKNKLTCRTRYKLKELRKGLWEKSQRV 159


>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 ENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDES 416
           E+ S    H +      ++E+K ++K  ENL+       KSY  +  ++ +S
Sbjct: 170 EDNSLNNSHSENDSKNRVSEKKYEEKTGENLVTETYQEQKSYQNSDYERQKS 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,179,048
Number of Sequences: 59808
Number of extensions: 389480
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)