Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0291
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04550.3 68415.m00462 dual specificity protein phosphatase fa... 30 1.2
At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containi... 29 3.6
At5g22720.1 68418.m02654 F-box family protein contains F-box dom... 29 3.6
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 28 4.8
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta... 28 4.8
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 28 4.8
At4g27860.1 68417.m04000 integral membrane family protein contai... 28 6.3
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 28 6.3
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ... 28 6.3
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 27 8.4
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 27 8.4
At1g54740.1 68414.m06242 expressed protein 27 8.4
>At2g04550.3 68415.m00462 dual specificity protein phosphatase
family protein contains Pfam profile: PF00782 dual
specificity phosphatase, catalytic domain
Length = 188
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +3
Query: 348 NLIPNLTNSHK-SYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRILCP 524
N +P N ++ S+ Y G+D ++ + D + F D +++ SG S
Sbjct: 82 NTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKFL-DQCEKDKARVLVHCMSGKSRSPAVV 140
Query: 525 KLFMYRQTAYKIINCIKWQKQRRLHNYVSRSNNKGPC 635
++ ++ +++ +W KQRR +S N C
Sbjct: 141 VAYLMKRKGWRLAESHQWVKQRRPSTDISPGNFTNNC 177
>At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 486 SENSGTSTRILCPKLFMYRQTAYKIINCIKWQKQRRLHNYVSRSNNKGPCII 641
S NSGT + I K + K+ +CI + +++H +V R C I
Sbjct: 32 SNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYI 83
>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 390 YTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRI 515
Y +DK E ++ ++ + N + Y+SK R NSG+ T++
Sbjct: 234 YLDLDKSEVLIDATRLKYLNLEADQYESKTIR--NSGSLTKV 273
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 279 PEHRDPQDYTAL--NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 452
P+ ++P + + NE+K D IP N + YG+ D + ++ +K N
Sbjct: 39 PKEQNPNNLVPIETNEKKEPDDQNPAFIPQSENGYGLYGHETTDNNNEELNNNKYE-DNV 97
Query: 453 NGNLYQSKESRSENSGT 503
N + S S SE + T
Sbjct: 98 NYDDSFSTPSLSETAQT 114
>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 702
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 402 DKDESIVSQDKVAFTNDNGNLYQSKESRSENSGT 503
D+DE +K NG++ Q KES SE SG+
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGS 699
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = +3
Query: 294 PQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQS 473
P + N +Q + ++N+ P N H+ Y S S + + N ++
Sbjct: 88 PNQHRRYNAPDNQHQRSDNIGPPQPNQHRRYNAPDNQHQRSDNSGPPQPYRHRRNNAPEN 147
Query: 474 KESRSENSG 500
+ RS+N G
Sbjct: 148 QHQRSDNIG 156
>At4g27860.1 68417.m04000 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 611
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 249 PSNVENPSQRPEHRDPQ--DYTALNERKSQDKHTENLIPNLTNSHKS 383
PS++E PS++ +++ Q D A + + DK TEN +LT + S
Sbjct: 324 PSSLEKPSKQTVNKETQNHDKEAADPDQDVDKETENQKSHLTPIYPS 370
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -2
Query: 300 LEGRDVLVSDLDSRRSKVMRYFMVSSFYD*VSKIWNVVASTR 175
+EG VL +D DS V + F V D V+K + +VASTR
Sbjct: 243 MEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTR 284
>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
class), putative / PRM1 homolog, putative similar to
disease resistance protein rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631;
Length = 941
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +3
Query: 258 VENPSQRPEHRDPQDYTALNE------RKSQD--KHTENLIPNLTNSHKSYGYTGIDKDE 413
+ NPS+ +P+ + L++ +KS D KHT ++ N K Y G D E
Sbjct: 10 LRNPSRGVGKSEPETFVCLSKDDERSPKKSSDAKKHTSAVVKNCVEEIKEIIYDGEDTIE 69
Query: 414 SIVSQDKVAFTN 449
+ V + + T+
Sbjct: 70 TFVLEQNLGKTS 81
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 258 VENPSQRPEHRDPQDYTALNERKSQDKHTENL 353
V+ S PE RDP+ +T L E +D EN+
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 258 VENPSQRPEHRDPQDYTALNERKSQDKHTENL 353
V+ S PE RDP+ +T L E +D EN+
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209
>At1g54740.1 68414.m06242 expressed protein
Length = 280
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 181 HQENLHHNNHSRFRSHI 131
H EN HH+ H R R HI
Sbjct: 241 HDENNHHHYHHRHRHHI 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,310
Number of Sequences: 28952
Number of extensions: 272685
Number of successful extensions: 717
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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