Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0290
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.84 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   4.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   4.5  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    24   7.8  

>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 151 LQTFSLLLIFYDLFLRRNRLNR 86
           L+TF L  +F+ +FLR+N ++R
Sbjct: 178 LETFLLFRLFFGVFLRKNSISR 199


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 160 ELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRFRCCKAAT 339
           E AK++     KT+  PKK +       + +  KK   +  K++ K    S      +++
Sbjct: 35  EAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSS 94

Query: 340 E 342
           E
Sbjct: 95  E 95


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 160 ELAKKLED-TKQKTETRPKKERPAQXGEEAGKTEKKQ 267
           E ++K ED   +K E R KKE   +  E+  K EKK+
Sbjct: 432 ESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKE 468



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 DELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQ 267
           DE AKK E  ++K   + KKE+     E+  K EKK+
Sbjct: 439 DEAAKKEEKRRKKEAKKEKKEKK----EKKEKKEKKK 471


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 151 TADELAK-KLEDTKQKTETRP-KKERPAQXGEEAGKTEKKQNGRSMKNR*KT 300
           +ADE A  K ++ K K E +  KK++P+   +   K +KK   +S K + KT
Sbjct: 61  SADEEASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKK---KSKKGKSKT 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,145,469
Number of Sequences: 5004
Number of extensions: 15598
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)