Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0290
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0584 - 19010345-19010656,19010959-19011018 28 3.2
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 27 4.3
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 4.3
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 27 4.3
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 27 5.6
02_02_0610 - 12113162-12113965 27 5.6
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 5.6
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 27 5.6
07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488 26 9.9
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 160 ELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMK 285
E K E K+ + KKE+ + GEEA K K++ + K
Sbjct: 15 EEKKDKEHAKEAKPEKEKKEKKEKNGEEAAKPAKEKKEKKEK 56
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 154 ADELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQN 270
A E+ + +++ K + TRPKK E +TE K N
Sbjct: 128 AQEVVRMVQNNKNERNTRPKKAVVNYLANEILRTEMKPN 166
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 169 KKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTP 306
KK E+ K+ E KK+ + EE K EKK+ +K K TP
Sbjct: 104 KKPEEKKKSEEE--KKKGDEKKPEEGKKEEKKEEKPKVKEETKATP 147
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 205 RPKKERPAQXGEEAGKTEKKQNGRSMKN 288
+PK+ PA G AG+ + +Q RSM +
Sbjct: 727 KPKRRTPAFSGRNAGQDKSQQRTRSMSH 754
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +1
Query: 181 DTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRFR 321
DT+ + +T KK++ +K +N + + T P S+F+
Sbjct: 391 DTETEQDTSEKKQKQTHLPASVPAADKLENSKRVAEEENTLPASKFK 437
>02_02_0610 - 12113162-12113965
Length = 267
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 406 SLVLVLSIAGASAVASRPASGAPLPPCS 323
+L+L+L + A+AVA+ + AP PP +
Sbjct: 6 TLILLLPLLAAAAVAAADVAPAPAPPAA 33
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 178 EDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRF 318
E T ++ E+ +KE PA+ GE + + E +N TP F
Sbjct: 247 ETTAKEGESTDEKETPAKEGESSDEEETPAKNTKEENEPVVTPLKTF 293
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 320 GAARRQRSPGSG 355
GAARRQR PGSG
Sbjct: 38 GAARRQRGPGSG 49
>07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488
Length = 151
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 382 AGASAVASRPASGAPLP 332
A A+AVA RPASG LP
Sbjct: 71 AAAAAVARRPASGGRLP 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,005
Number of Sequences: 37544
Number of extensions: 111830
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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