Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0290
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8541| Best HMM Match : Vicilin_N (HMM E-Value=1.7)                  29   1.9  
SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     27   4.4  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_35356| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_11348| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)                    27   5.8  
SB_47460| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 27   5.8  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)                  27   5.8  
SB_1093| Best HMM Match : E-MAP-115 (HMM E-Value=3.3)                  27   5.8  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            27   7.7  
SB_17276| Best HMM Match : E-MAP-115 (HMM E-Value=0.57)                27   7.7  

>SB_8541| Best HMM Match : Vicilin_N (HMM E-Value=1.7)
          Length = 165

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           A++ ED K + +TR ++E P Q   E  + ++K +  + +NR
Sbjct: 81  AEEPEDKKMQRQTRKRQEPPHQQDVEVQEAQQKVDDLTRQNR 122


>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +1

Query: 169 KKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKN 288
           +K++  ++ T+T   KE+  + GE+A ++EK+++  + K+
Sbjct: 574 EKMDVEQEVTKTETSKEKDGKGGEKAKESEKEEDVATEKS 613


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 160  ELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMK-NR*KTTPGSRFR 321
            ELAK+ E+ K+K + R K+    +   E  + E +   R    +R ++ P  R R
Sbjct: 993  ELAKEEEEKKEKEQEREKERERLREQREKEREETRMRARDRSGDRARSPPRGRAR 1047


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 169 KKLEDTKQKTETRPKKERPAQXGEEAGK-TEKKQNGRSMKNR 291
           ++ +DT++K   +   E P+  G+E G+   KK++ RS + +
Sbjct: 872 ERSKDTREKKRHKGSSEAPSTDGQEEGELVSKKRSRRSREEK 913


>SB_35356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 190 QKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTT 303
           Q+T T  K++R         KT K+Q  +  KN  KTT
Sbjct: 34  QQTTTATKQQRQQNDNGNKTKTTKRQRQQKEKNNKKTT 71


>SB_11348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 190 QKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTT 303
           Q+T T  K++R         KT K+Q  +  KN  KTT
Sbjct: 86  QQTTTATKQQRQQNDNGNKTKTTKRQRQQKEKNNKKTT 123


>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
          Length = 270

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 169 KKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           K +   K+K + + KK +  + G+E GK E+K+     K+R
Sbjct: 38  KCVSSPKKKHKHKHKKHKRKREGDEHGKKERKREKSRDKDR 78


>SB_47460| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 178

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           A++ ED K++ +TR ++E P Q   E  + ++  +  + +NR
Sbjct: 84  AEEPEDKKRQRQTRKRQEPPHQQDVEVQEAQQNVDDLTRQNR 125


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 172  KLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*K 297
            K E  KQK E+  ++E     G+E  + EK++  +  +NR K
Sbjct: 952  KEEVNKQKKESDKQEESKENEGKEMTRKEKRKKIKEERNRRK 993


>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
          Length = 506

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           A++ ED K++ +TR ++E P Q   E  + ++  +  + +NR
Sbjct: 91  AEEPEDKKRQRQTRKRQEPPHQQDVEVQEAQQNVDDLTRQNR 132


>SB_1093| Best HMM Match : E-MAP-115 (HMM E-Value=3.3)
          Length = 153

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           A++ ED K++ +TR ++E P Q   E  + ++  +  + +NR
Sbjct: 91  AEEPEDKKRQRQTRKRQEPPHQQDVEVQEAQQNVDDLTRQNR 132


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 181 DTKQKTETRPKKERPAQXGEEAGK--TEKKQNGRSMKNR*KTTP 306
           D+  K   +P K       +E+      KKQ+G ++    KTTP
Sbjct: 603 DSTSKNRNKPVKMEKVSENDESDSDLVSKKQSGNNLSKNKKTTP 646


>SB_17276| Best HMM Match : E-MAP-115 (HMM E-Value=0.57)
          Length = 618

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR 291
           A++ ED K + +TR ++E P Q   E  + ++  +  + +NR
Sbjct: 340 AEEPEDKKMQRQTRKRQEPPHQQDVEVQEAQQNVDDLTRQNR 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,814,794
Number of Sequences: 59808
Number of extensions: 122369
Number of successful extensions: 519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)