Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0290
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 379  GASAVASRPASGAPLPPC 326
            G S+ A+  AS AP+P C
Sbjct: 1040 GKSSGAAAMASAAPMPAC 1057


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 397 LVLSIAGASAVASRPASGAPLPP 329
           LV ++   +     P++GAP+PP
Sbjct: 397 LVSAVRSPAGGQLPPSAGAPMPP 419


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 160 HRLLQTFSLLLIFYDLFLRRNRLNRPSSILTKIFVLCFD*MND 32
           H+L++    L  FY++      LN   + +T+  + CF  MND
Sbjct: 528 HKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 160 HRLLQTFSLLLIFYDLFLRRNRLNRPSSILTKIFVLCFD*MND 32
           H+L++    L  FY++      LN   + +T+  + CF  MND
Sbjct: 528 HKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 256 EKKQNGRSMKNR*KTTPGS 312
           EKK N  ++K    TTP S
Sbjct: 10  EKKNNVENLKGGGSTTPAS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,908
Number of Sequences: 438
Number of extensions: 1015
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)