Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0290
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    33   0.096
At3g48710.1 68416.m05319 expressed protein putative protein - Ar...    29   0.89 
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    28   2.1  
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera...    28   2.7  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    27   3.6  
At1g64630.1 68414.m07327 protein kinase family protein contains ...    27   3.6  
At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identi...    27   4.8  
At4g32010.1 68417.m04557 transcriptional factor B3 family protei...    27   6.3  
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    26   8.3  
At1g35660.1 68414.m04432 expressed protein                             26   8.3  

>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 32.7 bits (71), Expect = 0.096
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 178 EDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRFRC 324
           ED +   ETR KKE+ A+  +E  K +KK+  + +    K    S   C
Sbjct: 122 EDDEDDEETRKKKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSC 170


>At3g48710.1 68416.m05319 expressed protein putative protein -
           Arabidopsis thaliana, EMBL:AL078465.1
          Length = 462

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 157 DELAKKLEDT-KQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGS 312
           D+  +K + T K++   R KKE+PA   E++ K   K + +S +   K+T  S
Sbjct: 291 DKAKEKTKSTDKKRLSKRTKKEKPAAEEEKSIKGSAKSSRKSFRQVDKSTTSS 343


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 172 KLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRF 318
           ++ED  ++ E  P+  R  + G++ G++    +GR  +   K + GS F
Sbjct: 16  EMEDEDEEDEYEPRSSRKGRSGKKRGRSNSDSDGR--RGSKKKSSGSAF 62


>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 467

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 NGAPEAGRDATAEAPAMDSTKTK 404
           +G PE G DAT + PA+  + TK
Sbjct: 76  DGLPETGVDATQDIPALSESTTK 98


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSM 282
           A++ E+ K+KTE   KKE+  +  EE G    +QNG S+
Sbjct: 486 AEEAEEKKKKTEEDEKKEK-VKAKEENGNV-SQQNGNSI 522


>At1g64630.1 68414.m07327 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719;
           contains serine/threonine protein kinases active-site
           signature, PROSITE:PS00108
          Length = 524

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 EEAGKTEKKQNGRSMKNR*KTTPGSRFRCCKAATE 342
           EEAG++ K +      +R  +  GSR  CC  A E
Sbjct: 432 EEAGESMKSEISADYYHRVSSNEGSRLGCCCEAVE 466


>At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identical
           to Ran-binding protein (atranbp1a) GI:2058282 from
           [Arabidopsis thaliana]
          Length = 228

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 AKKLEDTKQKTETRPKKERPAQXGEEAGKTEK 261
           AK +E  K + +   KKE  A+   EA KTE+
Sbjct: 192 AKAVETAKTEVKAEEKKESEAEKSGEAKKTEE 223


>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
           GI:7801376; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 780

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 157 DELAKKLEDTKQKTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRFRCCKAA 336
           DEL+ + +DT  +     K+ R A   E+  +++      S+ N   TT G +     AA
Sbjct: 561 DELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQGEITVAA 620

Query: 337 T 339
           T
Sbjct: 621 T 621


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 163 LAKKLEDTK-QKTETRPKKERPAQXGEEAGKTEKK 264
           +AK+ E+ K +K E + +KER  +  EE    EKK
Sbjct: 1   MAKEGEERKKEKKEKKERKERKRREAEELAVREKK 35


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 154 ADELAKKLEDTKQ--KTETRPKKERPAQXGEEAGKTEKKQNGRSMKNR*KTTPGSRFRCC 327
           A ++++ +ED +   K E + +KE     GE  G    +QN  + K       G  F+  
Sbjct: 769 ASKVSRDVEDERVNFKVENKSRKEEEDTSGETKGAVRLEQNESNSKETPGAKKGGIFKYL 828

Query: 328 KAA 336
           K +
Sbjct: 829 KGS 831


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,041,273
Number of Sequences: 28952
Number of extensions: 82738
Number of successful extensions: 357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)