Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0287
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   6.7  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   8.9  

>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 530 NPPPASSGTPPVVAANFISNNFSGERXLGDFHAEQVSYIG 411
           NP P S+ TPP  +A+ + N        G      V  +G
Sbjct: 68  NPEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLG 107


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -2

Query: 144 QELFNLRIRYWKHTS----DTIVQYLVL 73
           ++LFNL +R WK+ S    D  + YL+L
Sbjct: 183 EDLFNLSVRTWKNPSASVHDKALLYLIL 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,292
Number of Sequences: 5004
Number of extensions: 65909
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)