Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0287
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    31   1.0  
05_01_0204 - 1461676-1462033,1462173-1462240                           31   1.3  
05_03_0427 - 13886814-13887935                                         30   1.7  
06_02_0359 + 15155052-15155097,15155537-15155769                       29   4.0  
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371...    29   4.0  
09_04_0678 - 19396530-19396946                                         29   5.3  
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    28   7.1  
06_03_0334 - 19660526-19661755                                         28   9.3  

>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 511 ELAGGGFEARSY*RYPTVPGHWNSHIHRHRSRNYQRTH 624
           E  GGG+E+ S+ +Y  +P H + H H H     Q  H
Sbjct: 43  EYGGGGYESHSHHQY-HLPDHHHHHHHHHPPPRVQHHH 79


>05_01_0204 - 1461676-1462033,1462173-1462240
          Length = 141

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 608 FRER*R*MCEFQCPGTVGYR**DRASNPPPASSGTPP 498
           F  R R +C  +C   VG+   DRA+  PP+SS  PP
Sbjct: 86  FTRRTRLLCR-KCGAHVGFAYDDRAARSPPSSSPPPP 121


>05_03_0427 - 13886814-13887935
          Length = 373

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -1

Query: 706 LISDARPVFRMRFVFTLFHLDSE*IGCSESFGSSVSGDGECVSSNVLVLWDTANKTVPRI 527
           ++SD  PVF   F   LF L    +  S  F     GD E V+  + + +       PR 
Sbjct: 59  IVSDRDPVFTGHFWQELFRLTKVQLQISSVFHPQSDGDTEAVNKTIAMYFSCLASDRPRS 118

Query: 526 HRQPVRVRLPWS 491
             Q     LPWS
Sbjct: 119 WLQ----WLPWS 126


>06_02_0359 + 15155052-15155097,15155537-15155769
          Length = 92

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 237 GAQGTSVRATLAVSSCSQSARDDFAFDN 320
           G  GT+ R+T A+ +CS+SA    AF N
Sbjct: 33  GLTGTATRSTAALQACSRSAMARSAFPN 60


>02_01_0513 +
           3715406-3715543,3716298-3716708,3716882-3717085,
           3717552-3717729,3717833-3717951
          Length = 349

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 255 VRATLAVSSCSQSARDDFAFDNSEEFQVELTANHSEIAKNG 377
           VRA +AV + +Q+     A   + E + +L A HSE+A+ G
Sbjct: 33  VRAAVAVQAEAQAKDSPLALAQAHETRDKLKAAHSELAEEG 73


>09_04_0678 - 19396530-19396946
          Length = 138

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 552 PLIRPCLESTASQFGYASRGRCEL 481
           PL RP LE     FGYA+ G  +L
Sbjct: 58  PLFRPLLEEAEEAFGYAAAGPLQL 81


>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 282 CSQSARDDFAF-DNSEEFQVELTANHSEIAKNGLRRLWGVPDT 407
           C  S  DDF F DN E+   E  A H ++ K    +L    DT
Sbjct: 570 CKTSLLDDFDFYDNREKMMQERKAKHQQLKKVVDEKLLNAVDT 612


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 231 RWGAQ-GTSVRATLAVSSCSQSARDDFAFDNSEEFQVELTANHSEIAKNGLRRLWGVPDT 407
           ++G Q  TS+RAT   SS   ++      +  E  +VE  ++ SE  + G R  W   D 
Sbjct: 109 QFGMQYSTSIRATANTSSHGSASPCHTRHNEKEVVEVEEASDSSEEGRRGTRINWTEDDN 168

Query: 408 L 410
           +
Sbjct: 169 I 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,777
Number of Sequences: 37544
Number of extensions: 447029
Number of successful extensions: 1406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)