Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0287
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)                29   5.5  
SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4)              28   7.2  
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   9.5  
SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 553 YPTVPGHWNSHIHRHRSRNYQRTHCN 630
           Y   P +WN   H  R R Y+ TH N
Sbjct: 20  YERSPLNWNPFDHTRRRRRYRNTHAN 45


>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
          Length = 739

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 288 QSARDDFAFDNSEEFQVELTANHSEIAKNGLRRLW 392
           + ARDDF  + SEE++ E+  +H +  K  +RR +
Sbjct: 350 KGARDDFVEEVSEEYE-EIREDHYDSLKGAVRRFY 383


>SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4)
          Length = 146

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 485 SQRPREAYPNWLAVDSRHGLISGIPQYQD 571
           ++  ++  P+WLA+D     + G+P ++D
Sbjct: 2   TEEGKKTLPHWLALDESTNTLEGVPSWRD 30


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 485 SQRPREAYPNWLAVDSRHGLISGIPQYQD 571
           ++  ++  P+WLA+D     + G+P ++D
Sbjct: 56  TEEGKKTLPHWLALDESTNTLEGVPSWRD 84


>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 553 YPTVPGHWNSHIHRHRSRNYQRTHCN 630
           Y   P  WN   H  R R YQR H N
Sbjct: 274 YERSPLDWNPFDHIRRRRRYQRVHNN 299


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 299  SCRLRAR-GHSKSSAHRCTLRTPSSTLTHNAPNNSHKLILMICLY*SRNGRR 147
            +CR+R R G +K ++ R        T+T   P N+  +   +C   + NG R
Sbjct: 1301 TCRVRIRLGRAKYASRRMRTLPRRRTITSATPKNTENIKKELCRIFNNNGLR 1352


>SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 553 YPTVPGHWNSHIHRHRSRNYQRTHCN 630
           Y   P  WN   H  R R YQR H N
Sbjct: 175 YERSPLDWNPFDHIRRRRRYQRVHNN 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,762,423
Number of Sequences: 59808
Number of extensions: 518542
Number of successful extensions: 1289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)