Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0287
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.4  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.4  

>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 48  VYIKFNKSEEQDTVQLCPMYVSNNE 122
           V  K NK EEQDTV +  +  S  E
Sbjct: 182 VLTKINKIEEQDTVLVVNIEKSGKE 206


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 404 HVGLCRTPVPHGNPQGSVLRKSCCL 478
           H+G   TP P+G+P   ++  SC L
Sbjct: 121 HMG--HTPTPNGHPSTPIVYASCKL 143


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 374 WPKEIMGCTRHV 409
           WP +I+ CT H+
Sbjct: 166 WPYDILNCTIHI 177


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 12  CVVFCL*IKYCLVYIKFNKSEEQDTVQLCPMYVSNNE 122
           CV++C  +    V I  ++    D   L  MY SN+E
Sbjct: 10  CVIYCALVHADTVAILCSQKAGFDLSDLKSMYESNSE 46


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 312 FDNSEEFQVELTANHSEIAKNGLRRLWGVPD 404
           F   +EF V L +  + I +N    ++ VPD
Sbjct: 538 FMQMDEFVVNLKSGSNTIERNSHESVFVVPD 568


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 312 FDNSEEFQVELTANHSEIAKNGLRRLWGVPD 404
           F   +EF V L +  + I +N    ++ VPD
Sbjct: 538 FMQMDEFVVNLKSGSNTIERNSHESVFVVPD 568


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 12  CVVFCL*IKYCLVYIKFNKSEEQDTVQLCPMYVSNNE 122
           CV++C  +    V I  ++    D   L  MY +N+E
Sbjct: 10  CVIYCALVHADTVAILCSQKAGFDLSDLKSMYEANSE 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,829
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)