Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0287
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11720.1 68417.m01870 hypothetical protein                          29   2.6  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    29   4.5  

>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 550 RYPTVPGHWNSHIHRHRSRNYQRTHCNRFIHYRGE 654
           R   V  H + H HRH   +++RTH  R  H+ G+
Sbjct: 564 RADVVNRHHHHHKHRHHHNHHRRTH-QRHKHHHGQ 597


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 231 RWGAQGTSVRATLAVSSCSQSARDDFA 311
           ++G +GT    T+AV+SCS+S   DFA
Sbjct: 637 KYGIRGTPEVYTIAVNSCSKSGDWDFA 663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,761
Number of Sequences: 28952
Number of extensions: 354451
Number of successful extensions: 1058
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)