Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0286
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   162   4e-41
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.53 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   0.93 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   1.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   4.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   8.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   8.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  162 bits (393), Expect = 4e-41
 Identities = 80/135 (59%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP* 565
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG    + HT P         V  
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSV-- 164

Query: 566 QFRLIPAPRGTGIVS 610
             RL+PAPRG G+V+
Sbjct: 165 TVRLVPAPRGAGLVA 179



 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLP K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 150 RAHDHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 261 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 371
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 307
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 337 LFLYRHDLKNLIIQGRAEEEINDLEFFDGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 164
           L +Y   L+NL+ QG+A E +N ++            +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 331 LYRHDLKN--LIIQGRAEEEINDLEFFDGKENK*MLSSL 221
           + R +L N  LI++    EEI+D +F D   N  +++SL
Sbjct: 846 IQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASL 884


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 144 HDHG--RDHD--RVHEDRHGLYLHRVIRNRRENRHVHRLEQRPPLLNDG 10
           H HG  R H+  R H  RH  +      ++R++R+  R E  P   NDG
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREHSP---NDG 192


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 541 VTGKCGSVTIPADSCPSWYWY 603
           V G C  +      CPSW WY
Sbjct: 618 VHGLCWVLLYYYQGCPSWTWY 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,007
Number of Sequences: 5004
Number of extensions: 50045
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)