Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0286
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              190   8e-49
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.32 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   1.3  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   2.2  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   3.0  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   3.0  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   3.0  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   3.0  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   5.2  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.2  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   6.9  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               28   6.9  
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 27   9.1  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    27   9.1  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  190 bits (463), Expect = 8e-49
 Identities = 96/131 (73%), Positives = 106/131 (80%), Gaps = 1/131 (0%)
 Frame = +2

Query: 221 QTREHLLVF-FTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 397
           +T EH+ +F   IKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 398 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNR*ESHTPSLARSPASVVP*QFRL 577
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN+         +        + RL
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRL 143

Query: 578 IPAPRGTGIVS 610
           IPAPRGTGIVS
Sbjct: 144 IPAPRGTGIVS 154



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +3

Query: 171 WVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           WVPVTKLGRLV++ KI  LE IYLFSLP K
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 472 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 293
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 292 RAEEEI 275
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 472 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 293
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 292 RAEEEI 275
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 195 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 85
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -2

Query: 445 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 314
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 412
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 349 TAHTFQGICCHWRQQRSYW 405
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 436
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 144 HDHGRDHDRVHEDRHGLYLHR-VIRNRRENRHVHRLEQRPPLLND 13
           H H R H   H   H  + HR   R+R  + H H   +R     D
Sbjct: 312 HHHHRHHHHHHHHHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFTD 356


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 474 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 343
           D+L+  IAP    A SLL      + P+++P A +AL  ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 286 EEEINDLEFFDGKE 245
           EEE+ DLEFFDG E
Sbjct: 17  EEELPDLEFFDGAE 30


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 326  VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 499
            +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515

Query: 500  W 502
            W
Sbjct: 1516 W 1516


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 326 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 499
           +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329

Query: 500 W 502
           W
Sbjct: 330 W 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,567,360
Number of Sequences: 59808
Number of extensions: 427376
Number of successful extensions: 1215
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)