Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0286
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 159 1e-39
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of... 28 4.6
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical ... 28 6.0
AC024817-38|AAF59578.1| 608|Caenorhabditis elegans Hypothetical... 28 6.0
U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin p... 27 8.0
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 159 bits (387), Expect = 1e-39
Identities = 87/121 (71%), Positives = 95/121 (78%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
IKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85 IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR*E-SHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAI+ AKL+V+PVRRGYWGN+ HT P + V RLIPAPRGTGIV
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASV--MVRLIPAPRGTGIV 201
Query: 608 S 610
S
Sbjct: 202 S 202
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = +3
Query: 156 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
E + EW PVTKLGRLV+E KI LE IYL SLP K
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of
mec and unc defectsprotein 2 protein.
Length = 547
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 150 RAHDHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQR 31
R+ D RD DR + DR Y + +RRE R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 156 PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 43
P RAH+ G+ H+R H HG H RNR N +R
Sbjct: 60 PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 96
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 156 PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 43
P RAH+ G+ H+R H HG H RNR N +R
Sbjct: 904 PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 940
>AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical
protein C03H5.6 protein.
Length = 530
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 523 HTVPCKVTGKCGSVTIPADSCPSW 594
H CKVT CG+VT SC ++
Sbjct: 326 HCSRCKVTNTCGAVTWMCPSCKTY 349
>AC024817-38|AAF59578.1| 608|Caenorhabditis elegans Hypothetical
protein Y54G2A.20 protein.
Length = 608
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 219 DKLESIYLFSLPSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRHLLPLATTTV 398
D + F+LP +N + P M L+ ++ + D+ +VSR+ L L T TV
Sbjct: 266 DPADGFRHFTLPDENGLNFTLVVITPQHMENLKKYSHKMVLLDDTHNVSRYGLKLTTITV 325
Query: 399 I 401
I
Sbjct: 326 I 326
>U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin
protein 51 protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 541 VTGKCGSVTIPADSCPSWY-WY 603
VT C SVTIP+ CPS Y WY
Sbjct: 153 VTPTCPSVTIPS-HCPSGYTWY 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,722
Number of Sequences: 27780
Number of extensions: 297854
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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