Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0286
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 173 6e-44
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 173 8e-44
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 172 2e-43
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 172 2e-43
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 172 2e-43
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 172 2e-43
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 9e-06
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.46
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 1.8
At3g63100.1 68416.m07087 glycine-rich protein 29 2.4
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.4
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.2
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 4.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 5.6
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 5.6
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 5.6
At3g01450.1 68416.m00069 expressed protein 28 5.6
At2g37930.1 68415.m04656 expressed protein 28 5.6
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 7.4
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 7.4
At5g47430.1 68418.m05844 expressed protein 27 9.8
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 9.8
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 173 bits (422), Expect = 6e-44
Identities = 86/133 (64%), Positives = 103/133 (77%), Gaps = 2/133 (1%)
Frame = +2
Query: 218 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 397
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 398 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QF 571
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN+ + HT P V
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV--TV 187
Query: 572 RLIPAPRGTGIVS 610
R++PAPRG+GIV+
Sbjct: 188 RMVPAPRGSGIVA 200
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV G I ++E IYL SLP K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 173 bits (421), Expect = 8e-44
Identities = 83/121 (68%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAIILAKLSV+P+RRGYWGN+ + HT P V R++PAPRG+GIV
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSV--TVRMVPAPRGSGIV 190
Query: 608 S 610
+
Sbjct: 191 A 191
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV+EGKI K+E IYL SLP K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 172 bits (418), Expect = 2e-43
Identities = 84/121 (69%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAIILAKLSV+PVRRGYWGN+ + HT P V R++PAPRG+GIV
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV--TVRMVPAPRGSGIV 198
Query: 608 S 610
+
Sbjct: 199 A 199
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 172 bits (418), Expect = 2e-43
Identities = 84/121 (69%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAIILAKLSV+PVRRGYWGN+ + HT P V R++PAPRG+GIV
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV--TVRMVPAPRGSGIV 198
Query: 608 S 610
+
Sbjct: 199 A 199
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 172 bits (418), Expect = 2e-43
Identities = 84/121 (69%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAIILAKLSV+PVRRGYWGN+ + HT P V R++PAPRG+GIV
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV--TVRMVPAPRGSGIV 198
Query: 608 S 610
+
Sbjct: 199 A 199
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 172 bits (418), Expect = 2e-43
Identities = 84/121 (69%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSVLPVRRGYWGNR-*ESHT-PSLARSPASVVP*QFRLIPAPRGTGIV 607
ATAIRGAIILAKLSV+PVRRGYWGN+ + HT P V R++PAPRG+GIV
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV--TVRMVPAPRGSGIV 198
Query: 608 S 610
+
Sbjct: 199 A 199
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 302 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 481
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 482 PV 487
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 348 PARVCFCTGMILRTSSFRDGPRKKSMISNSLMVKKTSK 235
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -3
Query: 519 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 339 VCFCTGMILRTSSFR 295
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 138 HGRDH----DRVHEDRHGLYLHRVIRNRRENRHVH 46
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 144 HDHGRDHDRVHEDRHGLYLHRVIRNRRENRH 52
HD G H R H HG + HR R+ R++RH
Sbjct: 88 HDRGHGHGRGHGHGHG-HGHR--RHGRDHRH 115
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 144 HDHGRDHDRVHEDRHGLYLH 85
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 368 AFVAIGDNNGHIGLGVKCSKE 430
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 551 LPVTLQGTVCGFPICYPSNLF 489
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 132 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 519 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 339 VCF 331
CF
Sbjct: 222 TCF 224
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 188 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 322
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 174 PTLSGLPCRAHDHGRDHDRV-HEDRHGLYLHRVIRNRRENRHVH 46
P S R HD GRD DR H DR + R+RRE H
Sbjct: 882 PRKSSTRERDHDLGRDRDRERHRDRDRQHDLNRDRDRREKSSSH 925
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 LSEPIVQQWRTLLQP 45
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 141 DHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 25
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 144 HDHGRDHDRVHEDRHG 97
HDHG HD H HG
Sbjct: 158 HDHGHGHDHGHSHDHG 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,112
Number of Sequences: 28952
Number of extensions: 281009
Number of successful extensions: 818
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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