Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0285
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (...    29   2.4  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   7.5  

>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
           (GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
           chloroplast protein import component, Tic20 family
          Length = 501

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 565 YIYSSLYKRKLLK*IHKTTYPFLGYIFMQSNK*ISCYYFLSYLGM 431
           Y  ++ +    L+     TYPFLG I    +  +  Y+F++YLG+
Sbjct: 130 YAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGI 174


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 117 RRLCDTEIICDRKQ*QINITKLNLF-FTLATRLTKM 13
           + LC+ E ICDR+  + N+ + + + F L T   K+
Sbjct: 552 KMLCEVETICDREDTRKNVNQRSTYEFALRTECEKL 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,619
Number of Sequences: 28952
Number of extensions: 171781
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)