Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0284
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 139 3e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 132 6e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 116 2e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 114 1e-26
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 83 5e-17
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 53 3e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 43 5e-05
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 35 0.009
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.26
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.78
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 27 1.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 5.5
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 7.3
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 7.3
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 25 7.3
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 7.3
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 139 bits (337), Expect = 3e-34
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VL KM+ETAEAYLG V +AV+TVPAYFN
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFN 149
Score = 117 bits (282), Expect = 1e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 T 254
T
Sbjct: 64 T 64
Score = 87.4 bits (207), Expect = 2e-18
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLG
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLG 199
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 132 bits (318), Expect = 6e-32
Identities = 60/89 (67%), Positives = 72/89 (80%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VL KM+E+AEA+LG V +AV+TVPAYFN
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFN 149
Score = 117 bits (282), Expect = 1e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 T 254
T
Sbjct: 64 T 64
Score = 84.2 bits (199), Expect = 1e-17
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLG
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLG 199
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 116 bits (280), Expect = 2e-27
Identities = 53/89 (59%), Positives = 67/89 (75%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P +FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VLTKMKE +EA L K V+ AVITVPAYF+
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFS 153
Score = 103 bits (248), Expect = 2e-23
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYN 251
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 252 T 254
T
Sbjct: 68 T 68
Score = 81.8 bits (193), Expect = 8e-17
Identities = 40/49 (81%), Positives = 42/49 (85%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLG
Sbjct: 155 SQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLG 203
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 114 bits (274), Expect = 1e-26
Identities = 52/97 (53%), Positives = 72/97 (74%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQK 532
+L+KMK+TAEAYLGK V +AV+TVPAYFN + + K
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATK 190
Score = 101 bits (243), Expect = 7e-23
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYNT 254
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/49 (73%), Positives = 46/49 (93%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLG
Sbjct: 184 AQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLG 231
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 82.6 bits (195), Expect = 5e-17
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
+L+KM+ETA YLGK V+NAV+TVPAYFN
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFN 195
Score = 77.8 bits (183), Expect = 1e-15
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 239
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 240 NPYNTY 257
NP NT+
Sbjct: 109 NPENTF 114
Score = 71.7 bits (168), Expect = 9e-14
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLG
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLG 243
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +3
Query: 60 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 239
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 240 NPYNT 254
N NT
Sbjct: 63 NFRNT 67
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 266 KRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 442
KRL GR ++D ++ + ++ G KV Y E+ F ++ + TK+K
Sbjct: 72 KRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKA 131
Query: 443 TAEAYLGKTVQNAVITVPAYFNTLK 517
AEA L +V + VI++PA+F ++
Sbjct: 132 IAEAELIGSVSDVVISIPAWFTDIQ 156
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 514 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLG 657
QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G
Sbjct: 156 QRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFG 207
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYNT 254
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Score = 33.5 bits (73), Expect = 0.028
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 383 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDK 523
++K E S L ++ E+AE +LG V V++VP YF + K
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 35.1 bits (77), Expect = 0.009
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = -3
Query: 633 SFSSTLFVKTVSNRSSSRFIDDSENVQPRDGTCIFCGLSL----RVLKYAGTVITAFCTV 466
S S+++ T S SSS + S +VQP+ T I S L + V++ +
Sbjct: 451 SISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSST 510
Query: 465 LPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSN 286
L +SA+ ST T S ++SSP+ T +L S+ TS F S+ T SS
Sbjct: 511 LLSGSSAIP----STSSSTPS-SSIISSPM--TSVLSSSSSIPTSSSSDFSSSITTISSG 563
Query: 285 L 283
+
Sbjct: 564 I 564
Score = 27.1 bits (57), Expect = 2.4
Identities = 28/124 (22%), Positives = 50/124 (40%)
Frame = -3
Query: 657 AEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQPRDGTCIFCGLSLRVLKYAGTVITA 478
+ + + S SS L T S S+S I S + F S + I++
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSISS 620
Query: 477 FCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTV 298
T+L + S + +S+ + S +LSS + + + SL+T S+ T+
Sbjct: 621 SSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSSVIPSSSTL 677
Query: 297 ASSN 286
SS+
Sbjct: 678 VSSS 681
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPYN 251
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 252 TYSMPNV 272
+S+ NV
Sbjct: 83 AHSIRNV 89
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVS 415
P I + K L+ E VQ +P + + + +++ +++ + EE+
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 416 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLK 517
+M + AE + + + V+TVP +FN L+
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQ 175
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 67 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 162
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 216 AAKNQVAMNPYNTYSMPNVSSDVSSKML 299
A K Q+ +NP+ + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 171 PSYVAFTDTERLIGDAAKNQVAMNPYNTYSMPNVSSDVSSKMLLC 305
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +2
Query: 53 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 232
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREPE 532
Query: 233 GDEPLQHI 256
E + +
Sbjct: 533 KPEEIPSV 540
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 219 AKNQVAMNPYNTYSMPNVSSD 281
A N VA+NP+N Y + S+D
Sbjct: 283 AINAVAINPFNDYLLATASAD 303
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 153 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 49
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 385 RQNLFPRGSQFHGAYENEGNCRS-LSWQNCAECSYH--GSRVLQYSQRQATKDAGT 543
R+NLF + + +G E+E +CRS + ++N + ++ + S Q KD T
Sbjct: 51 RENLFFKEMRTNGKNEHETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKT 106
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 544 WYLHLLWLVFESIEVRGNRDNCILHSFAKISFGSFLH 434
W L LW + + IE N C+ ++++ + F H
Sbjct: 396 WRLFRLWSLIDDIEPPENIVRCMCNNYSAVGFWRAWH 432
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 382 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 260
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,498
Number of Sequences: 5004
Number of extensions: 61138
Number of successful extensions: 230
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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