Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0284
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 140 1e-33
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 136 1e-32
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 8e-32
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 118 3e-27
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 69 3e-12
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 6e-09
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.83
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 31 0.83
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.5
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.4
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 28 5.9
SB_44023| Best HMM Match : COX6B (HMM E-Value=6.5) 28 7.7
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 28 7.7
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.7
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 7.7
SB_38950| Best HMM Match : TP2 (HMM E-Value=8.4) 28 7.7
SB_34581| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.1) 28 7.7
SB_31874| Best HMM Match : TP2 (HMM E-Value=8.4) 28 7.7
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_13945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_416| Best HMM Match : HR1 (HMM E-Value=6.7) 28 7.7
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 140 bits (338), Expect = 1e-33
Identities = 65/89 (73%), Positives = 76/89 (85%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VL KMKETAEAYLG+ V +AVITVPAYFN
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFN 151
Score = 130 bits (315), Expect = 7e-31
Identities = 59/66 (89%), Positives = 63/66 (95%)
Frame = +3
Query: 57 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 236
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 237 MNPYNT 254
+NP NT
Sbjct: 61 LNPENT 66
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/49 (85%), Positives = 47/49 (95%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLG
Sbjct: 153 SQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLG 201
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 136 bits (330), Expect = 1e-32
Identities = 61/89 (68%), Positives = 73/89 (82%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P +FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VLTKMKETAEAYLG V +AV+TVPAYF+
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFH 151
Score = 135 bits (327), Expect = 3e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +3
Query: 57 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 236
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 237 MNPYNT 254
MNP NT
Sbjct: 61 MNPENT 66
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLG
Sbjct: 153 SQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLG 201
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 134 bits (323), Expect = 8e-32
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 57 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 236
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 237 MNPYNT 254
MNP NT
Sbjct: 61 MNPTNT 66
Score = 116 bits (280), Expect = 1e-26
Identities = 65/114 (57%), Positives = 74/114 (64%), Gaps = 25/114 (21%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV--- 412
P IFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 413 ----------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 508
SSMVL KMKETAEAYLG V +AV+TVPAYFN
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFN 176
Score = 89.8 bits (213), Expect = 2e-18
Identities = 45/49 (91%), Positives = 45/49 (91%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
SQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLG
Sbjct: 246 SQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLG 294
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +2
Query: 407 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 508
++SSMVL KMKETAEAYLG V +AV+TVPAYFN
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFN 244
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 118 bits (285), Expect = 3e-27
Identities = 57/97 (58%), Positives = 72/97 (74%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P +FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQK 532
VLTKMKETAEAYLGK V +AV+TVPAYFN + + K
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 857
Score = 103 bits (247), Expect = 1e-22
Identities = 48/61 (78%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPYN 251
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 252 T 254
T
Sbjct: 764 T 764
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/49 (77%), Positives = 45/49 (91%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLG
Sbjct: 851 AQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLG 898
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 KRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 442
KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+ T++K
Sbjct: 127 KRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKT 186
Query: 443 TAEAYLGKTVQNAVITVPAYF 505
TAE L V + VI+VP+Y+
Sbjct: 187 TAEIALKTKVTDCVISVPSYY 207
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 230
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 514 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLIFDLG 657
QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+ D+G
Sbjct: 211 QRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFVDIG 261
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 236
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 237 MNPYNT 254
+NP NT
Sbjct: 90 INPKNT 95
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +1
Query: 514 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 657
QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLG
Sbjct: 184 QRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLG 230
Score = 56.0 bits (129), Expect = 3e-08
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 242 PLQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSS 418
P I+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 419 MVLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQKMQVPSL 550
V+ K++ AE L TV AV++VPA F+ +K + ++ SL
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPAEFD-IKQRNATVKAASL 194
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +2
Query: 362 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQK 532
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FN + + K
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATK 58
Score = 48.0 bits (109), Expect = 7e-06
Identities = 36/68 (52%), Positives = 39/68 (57%), Gaps = 26/68 (38%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGLDKK 618
+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGLDK
Sbjct: 52 AQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKA 111
Query: 619 --GTGERN 636
G ERN
Sbjct: 112 RGGKAERN 119
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 126 GKVEIIANDQGNRTTPSYVAFTDTERLI 209
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 356 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 508
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFN 117
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLG 657
++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G
Sbjct: 119 AERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMG 171
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 135 EIIANDQGNRTTPSYVAFT-DTERL 206
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
Length = 829
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 642 KYISFSSTLFVKTVSNRSSSRFIDDSENVQPRDGTCIFCGLSLR 511
K++ SS LF S SS+R + S QP +G +F G+S+R
Sbjct: 82 KWLQISSFLFCIGTSISSSTRTLYQSCLAQPDNGEYLFTGISIR 125
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +1
Query: 421 GAYENEG-NCRSLSWQNCAECSYHGSRVLQYSQRQAT--KDAGTISGLNVLRIINEPTAA 591
GA +N + SL W C + YHG +V++ + A AG S NV+R + P A
Sbjct: 512 GATQNANESLNSLVWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP-AG 570
Query: 592 AIAYGLDKKGTG 627
G K TG
Sbjct: 571 HTQEGHPSKRTG 582
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 243 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 145
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 89
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 537 GKTQNPNECINSLVWARCPKHKHHGPKVVRFASASA 572
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 450 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRP 277
S F+F ST + +S +KV+ SPL + + P+ G S C V + + P
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNVQNLSRCP 1165
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 369 TLILGLPPSLTTSKGQCFMSACTVASSNLRPMRRLASNMCCRGSSPP 229
T + G PP L + C C A+ +L + + CC+ ++PP
Sbjct: 387 TAVDGTPPDLQAHEAAC----CASAAPSLTAGQASTGSSCCQSAAPP 429
>SB_44023| Best HMM Match : COX6B (HMM E-Value=6.5)
Length = 269
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 154 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 189
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 604 RKQSQQQSVH**FGERSTQRWYLHLLWLVFESIEVRGNRDNCILHSFAKIS 452
RK + ++ +H T + ++ LWL F + D C+LHS A ++
Sbjct: 397 RKDNYEKEIH----RLITAKDVIYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 645 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 559
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 353 KPKIKVA-YKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQ 529
+P K A Y +D+T E + + LT + ++ NAV P Y++ L+DKP
Sbjct: 435 RPADKQAEYLEDDETDGFESGALLNLTPARSRNPVQRNESYCNAVSRSPGYYSPLRDKPA 494
Query: 530 K 532
+
Sbjct: 495 R 495
>SB_38950| Best HMM Match : TP2 (HMM E-Value=8.4)
Length = 180
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 65 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 100
>SB_34581| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.1)
Length = 316
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 201 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 236
>SB_31874| Best HMM Match : TP2 (HMM E-Value=8.4)
Length = 259
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 144 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 179
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 318 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 353
>SB_13945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 227 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 262
>SB_416| Best HMM Match : HR1 (HMM E-Value=6.7)
Length = 316
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 GAYENEGNC-RSLSWQNCAECSYHGSRVLQYSQRQA 525
G +N C SL W C + +HG +V++++ A
Sbjct: 201 GKTQNPNECINSLVWARCPKHKHHGPKVVRFAAASA 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,256,638
Number of Sequences: 59808
Number of extensions: 515263
Number of successful extensions: 1613
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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